Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 10542-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1922 | 8.122e-03 | 9.694e-03 | 8.470e-02 |
|---|
| IPC-NIBC-129 | 0.2883 | 6.851e-02 | 8.880e-02 | 5.505e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2584 | 9.934e-03 | 1.530e-02 | 2.623e-01 |
|---|
| Loi_GPL570 | 0.2433 | 3.631e-02 | 3.602e-02 | 2.003e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1681 | 1.720e-04 | 7.970e-04 | 4.416e-03 |
|---|
| Parker_GPL1390 | 0.2353 | 1.095e-01 | 1.099e-01 | 5.646e-01 |
|---|
| Parker_GPL887 | 0.1496 | 4.866e-01 | 5.205e-01 | 5.200e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3546 | 1.408e-01 | 1.088e-01 | 6.292e-01 |
|---|
| Schmidt | 0.1977 | 8.818e-03 | 1.266e-02 | 1.186e-01 |
|---|
| Sotiriou | 0.3228 | 1.890e-03 | 5.080e-04 | 5.083e-02 |
|---|
| Wang | 0.0872 | 9.722e-02 | 6.655e-02 | 3.588e-01 |
|---|
| Zhang | 0.2376 | 3.798e-01 | 3.225e-01 | 6.831e-01 |
|---|
| Zhou | 0.4297 | 6.454e-02 | 6.859e-02 | 3.957e-01 |
|---|
Expression data for subnetwork 10542-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 10542-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| stmn2 |   | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| lama4 | | 5 | 50 | 136 | 121 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.200 | 0.057 | 0.089 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| gapdh | | 6 | 43 | 136 | 117 | 0.071 | 0.312 | 0.102 | 0.145 | 0.165 | 0.172 | -0.253 | 0.288 | 0.064 | 0.213 | 0.056 | -0.088 | 0.235 |
|---|
| tk1 | | 6 | 43 | 1 | 7 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.105 | -0.100 | 0.257 | 0.204 | 0.142 | 0.064 | 0.164 | 0.222 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| hbxip | | 1 | 164 | 311 | 317 | -0.128 | 0.190 | 0.074 | 0.110 | 0.123 | 0.107 | 0.097 | 0.069 | 0.104 | -0.010 | -0.076 | -0.027 | 0.122 |
|---|
GO Enrichment output for subnetwork 10542-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 |  | 9.904E-10 | 2.278E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.35E-09 | 2.703E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 3.996E-08 | 3.064E-05 |
|---|
| regulation of caspase activity | GO:0043281 | | 6.468E-07 | 3.719E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.313E-07 | 3.364E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.782E-07 | 3.75E-04 |
|---|
| viral genome replication | GO:0019079 | | 1.654E-06 | 5.436E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 3.211E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 2.854E-03 |
|---|
| glycolysis | GO:0006096 | | 1.401E-05 | 3.223E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 1.712E-05 | 3.58E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.895E-10 | 4.63E-07 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.5E-10 | 5.497E-07 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.104E-08 | 8.989E-06 |
|---|
| regulation of caspase activity | GO:0043281 | | 2.118E-07 | 1.293E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 2.487E-07 | 1.215E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 3.207E-07 | 1.306E-04 |
|---|
| viral genome replication | GO:0019079 | | 5.393E-07 | 1.882E-04 |
|---|
| glycolysis | GO:0006096 | | 4.573E-06 | 1.397E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 1.288E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 6.259E-06 | 1.529E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 1.579E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.126E-10 | 5.116E-07 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 5.048E-10 | 6.073E-07 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.101E-08 | 8.831E-06 |
|---|
| regulation of caspase activity | GO:0043281 | | 2.126E-07 | 1.278E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 2.375E-07 | 1.143E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 3.094E-07 | 1.241E-04 |
|---|
| viral genome replication | GO:0019079 | | 5.935E-07 | 2.04E-04 |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 1.415E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 1.36E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.224E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 6.887E-06 | 1.506E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.895E-10 | 4.63E-07 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.5E-10 | 5.497E-07 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.104E-08 | 8.989E-06 |
|---|
| regulation of caspase activity | GO:0043281 | | 2.118E-07 | 1.293E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 2.487E-07 | 1.215E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 3.207E-07 | 1.306E-04 |
|---|
| viral genome replication | GO:0019079 | | 5.393E-07 | 1.882E-04 |
|---|
| glycolysis | GO:0006096 | | 4.573E-06 | 1.397E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 1.288E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 6.259E-06 | 1.529E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 1.579E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.126E-10 | 5.116E-07 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 5.048E-10 | 6.073E-07 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.101E-08 | 8.831E-06 |
|---|
| regulation of caspase activity | GO:0043281 | | 2.126E-07 | 1.278E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 2.375E-07 | 1.143E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 3.094E-07 | 1.241E-04 |
|---|
| viral genome replication | GO:0019079 | | 5.935E-07 | 2.04E-04 |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 1.415E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 1.36E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.224E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 6.887E-06 | 1.506E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.458E-08 | 1.235E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.145E-08 | 1.276E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 6.346E-07 | 7.554E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-06 | 2.718E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 2.367E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.957E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 3.288E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 3.104E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.759E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 6.954E-06 | 2.483E-03 |
|---|
| regulation of caspase activity | GO:0043281 | | 7.403E-06 | 2.403E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.484E-08 | 9.062E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 5.475E-08 | 9.986E-05 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 8.943E-07 | 1.087E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.095E-06 | 2.823E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 2.288E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 2.451E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 2.144E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.703E-06 | 1.906E-03 |
|---|
| regulation of caspase activity | GO:0043281 | | 5.071E-06 | 1.85E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 5.601E-06 | 1.858E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.126E-10 | 5.116E-07 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 5.048E-10 | 6.073E-07 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.101E-08 | 8.831E-06 |
|---|
| regulation of caspase activity | GO:0043281 | | 2.126E-07 | 1.278E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 2.375E-07 | 1.143E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 3.094E-07 | 1.241E-04 |
|---|
| viral genome replication | GO:0019079 | | 5.935E-07 | 2.04E-04 |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 1.415E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 1.36E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.224E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 6.887E-06 | 1.506E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 9.904E-10 | 2.278E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.35E-09 | 2.703E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 3.996E-08 | 3.064E-05 |
|---|
| regulation of caspase activity | GO:0043281 | | 6.468E-07 | 3.719E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.313E-07 | 3.364E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.782E-07 | 3.75E-04 |
|---|
| viral genome replication | GO:0019079 | | 1.654E-06 | 5.436E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 3.211E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 2.854E-03 |
|---|
| glycolysis | GO:0006096 | | 1.401E-05 | 3.223E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 1.712E-05 | 3.58E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 9.904E-10 | 2.278E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.35E-09 | 2.703E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 3.996E-08 | 3.064E-05 |
|---|
| regulation of caspase activity | GO:0043281 | | 6.468E-07 | 3.719E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.313E-07 | 3.364E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.782E-07 | 3.75E-04 |
|---|
| viral genome replication | GO:0019079 | | 1.654E-06 | 5.436E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 3.211E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 2.854E-03 |
|---|
| glycolysis | GO:0006096 | | 1.401E-05 | 3.223E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 1.712E-05 | 3.58E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 9.904E-10 | 2.278E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.35E-09 | 2.703E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 3.996E-08 | 3.064E-05 |
|---|
| regulation of caspase activity | GO:0043281 | | 6.468E-07 | 3.719E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.313E-07 | 3.364E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.782E-07 | 3.75E-04 |
|---|
| viral genome replication | GO:0019079 | | 1.654E-06 | 5.436E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 3.211E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 2.854E-03 |
|---|
| glycolysis | GO:0006096 | | 1.401E-05 | 3.223E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 1.712E-05 | 3.58E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 9.904E-10 | 2.278E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.35E-09 | 2.703E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 3.996E-08 | 3.064E-05 |
|---|
| regulation of caspase activity | GO:0043281 | | 6.468E-07 | 3.719E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.313E-07 | 3.364E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.782E-07 | 3.75E-04 |
|---|
| viral genome replication | GO:0019079 | | 1.654E-06 | 5.436E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 3.211E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 2.854E-03 |
|---|
| glycolysis | GO:0006096 | | 1.401E-05 | 3.223E-03 |
|---|
| viral infectious cycle | GO:0019058 | | 1.712E-05 | 3.58E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.35E-09 | 3.203E-06 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.202E-09 | 3.799E-06 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 6.948E-08 | 5.496E-05 |
|---|
| glycolysis | GO:0006096 | | 2.782E-07 | 1.65E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 6.348E-07 | 3.013E-04 |
|---|
| regulation of caspase activity | GO:0043281 | | 1.054E-06 | 4.168E-04 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 1.185E-06 | 4.016E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.185E-06 | 3.514E-04 |
|---|
| regulation of peptidase activity | GO:0052547 | | 1.564E-06 | 4.124E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.739E-06 | 4.127E-04 |
|---|
| viral genome replication | GO:0019079 | | 2.051E-06 | 4.424E-04 |
|---|
