Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1022-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1877 | 7.210e-03 | 8.597e-03 | 7.736e-02 |
|---|
| IPC-NIBC-129 | 0.2934 | 6.259e-02 | 8.074e-02 | 5.216e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2641 | 1.554e-02 | 2.289e-02 | 3.396e-01 |
|---|
| Loi_GPL570 | 0.2222 | 3.384e-02 | 3.356e-02 | 1.896e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1499 | 1.700e-05 | 1.030e-04 | 1.670e-04 |
|---|
| Parker_GPL1390 | 0.2419 | 1.166e-01 | 1.177e-01 | 5.813e-01 |
|---|
| Parker_GPL887 | 0.0694 | 7.643e-01 | 7.858e-01 | 8.200e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4045 | 9.952e-02 | 7.273e-02 | 5.169e-01 |
|---|
| Schmidt | 0.2317 | 7.144e-03 | 1.035e-02 | 1.004e-01 |
|---|
| Sotiriou | 0.3356 | 1.530e-03 | 3.890e-04 | 4.349e-02 |
|---|
| Wang | 0.1577 | 1.302e-01 | 9.359e-02 | 4.325e-01 |
|---|
| Zhang | 0.2716 | 1.439e-01 | 1.013e-01 | 3.292e-01 |
|---|
| Zhou | 0.4424 | 3.998e-02 | 4.051e-02 | 2.573e-01 |
|---|
Expression data for subnetwork 1022-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1022-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| ccnb2 | | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| cdk7 | | 2 | 104 | 185 | 179 | -0.102 | 0.121 | 0.116 | 0.126 | 0.170 | 0.008 | -0.135 | 0.090 | -0.085 | 0.182 | -0.023 | 0.021 | 0.168 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| cdc25a | | 9 | 27 | 109 | 90 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 | 0.264 |
|---|
| six2 | | 4 | 60 | 128 | 114 | -0.053 | 0.195 | 0.158 | 0.113 | 0.095 | 0.111 | 0.515 | -0.037 | 0.071 | 0.094 | 0.090 | -0.065 | -0.079 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 1022-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.818E-14 | 2.028E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 1.718E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 1.909E-03 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 1.57E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 5.664E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 4.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.077E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 5.416E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 7.25E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.746E-15 | 2.137E-11 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.043E-08 | 3.718E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.573E-07 | 5.353E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 2.612E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 2.318E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 2.896E-03 |
|---|
| response to UV | GO:0009411 | | 7.871E-06 | 2.747E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 4.05E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.326E-05 | 3.6E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.562E-05 | 3.815E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.631E-05 | 3.622E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.9E-15 | 2.382E-11 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 4.107E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 5.217E-04 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 4.434E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 2.264E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.328E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.572E-05 | 3.439E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.746E-15 | 2.137E-11 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.043E-08 | 3.718E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.573E-07 | 5.353E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 2.612E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 2.318E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 2.896E-03 |
|---|
| response to UV | GO:0009411 | | 7.871E-06 | 2.747E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 4.05E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.326E-05 | 3.6E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.562E-05 | 3.815E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.631E-05 | 3.622E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.9E-15 | 2.382E-11 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 4.107E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 5.217E-04 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 4.434E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 2.264E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.328E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.572E-05 | 3.439E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.092E-15 | 3.901E-12 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 3.089E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.7E-08 | 3.214E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 4.545E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.044E-07 | 7.457E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 6.677E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 2.213E-07 | 1.129E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.854E-07 | 1.274E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.004E-06 | 3.983E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.243E-06 | 4.439E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.759E-06 | 1.22E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.229E-15 | 4.483E-12 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.614E-09 | 4.768E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.462E-08 | 1.778E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.699E-08 | 1.55E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.481E-08 | 6.917E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.836E-08 | 5.98E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.457E-07 | 7.595E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.744E-07 | 7.954E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.258E-07 | 9.151E-05 |
|---|
| interphase | GO:0051325 | | 2.492E-07 | 9.089E-05 |
|---|
| cyclin-dependent protein kinase activity | GO:0004693 | | 7.579E-07 | 2.514E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.9E-15 | 2.382E-11 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 4.107E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 5.217E-04 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 4.434E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 2.264E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.328E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.572E-05 | 3.439E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.818E-14 | 2.028E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 1.718E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 1.909E-03 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 1.57E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 5.664E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 4.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.077E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 5.416E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 7.25E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.818E-14 | 2.028E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 1.718E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 1.909E-03 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 1.57E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 5.664E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 4.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.077E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 5.416E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.818E-14 | 2.028E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 1.718E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 1.909E-03 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 1.57E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 5.664E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 4.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.077E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 5.416E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.818E-14 | 2.028E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 1.718E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 1.909E-03 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 1.57E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 5.664E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 4.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.077E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 5.416E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.5E-13 | 3.559E-10 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.789E-07 | 2.123E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.839E-06 | 2.245E-03 |
|---|
| interphase | GO:0051325 | | 3.109E-06 | 1.844E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.277E-05 | 6.059E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.506E-05 | 5.956E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.914E-05 | 6.487E-03 |
|---|
| response to UV | GO:0009411 | | 2.119E-05 | 6.286E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.677E-05 | 7.059E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.567E-05 | 8.465E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.567E-05 | 7.695E-03 |
|---|
