Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6310
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7580 | 3.265e-03 | 5.200e-04 | 7.598e-01 | 1.290e-06 |
|---|
| Loi | 0.2291 | 8.213e-02 | 1.186e-02 | 4.327e-01 | 4.214e-04 |
|---|
| Schmidt | 0.6716 | 0.000e+00 | 0.000e+00 | 4.690e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7906 | 0.000e+00 | 0.000e+00 | 3.485e-03 | 0.000e+00 |
|---|
| Wang | 0.2601 | 2.890e-03 | 4.572e-02 | 4.051e-01 | 5.353e-05 |
|---|
Expression data for subnetwork 6310 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6310 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| NMT1 |   | 2 | 743 | 1190 | 1189 | 0.099 | -0.161 | -0.183 | -0.057 | 0.077 |
|---|
| PAX6 | | 22 | 69 | 318 | 312 | 0.259 | -0.003 | 0.112 | undef | 0.168 |
|---|
| SORBS1 | | 57 | 19 | 1 | 13 | -0.043 | 0.015 | 0.314 | -0.072 | 0.200 |
|---|
| NUP188 | | 8 | 222 | 1116 | 1079 | -0.187 | 0.094 | 0.058 | 0.161 | -0.070 |
|---|
| GNG11 | | 3 | 557 | 1364 | 1342 | 0.049 | -0.039 | 0.135 | 0.004 | 0.106 |
|---|
| EYA1 | | 8 | 222 | 1010 | 981 | 0.135 | -0.065 | 0.162 | 0.068 | -0.088 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| PSEN1 | | 10 | 167 | 366 | 362 | -0.041 | 0.110 | undef | 0.083 | undef |
|---|
| BARD1 | | 69 | 12 | 141 | 132 | 0.179 | -0.165 | 0.086 | 0.245 | -0.104 |
|---|
| SUMO1 | | 5 | 360 | 1034 | 1004 | 0.245 | -0.007 | 0.144 | 0.083 | 0.118 |
|---|
| WISP2 | | 3 | 557 | 957 | 949 | 0.232 | -0.010 | 0.088 | 0.047 | 0.204 |
|---|
| RB1 | | 31 | 43 | 1 | 22 | 0.013 | -0.051 | 0.057 | 0.100 | -0.082 |
|---|
| CCNA2 | | 21 | 73 | 179 | 183 | 0.176 | -0.053 | 0.188 | -0.078 | 0.246 |
|---|
| GNB5 | | 9 | 196 | 1131 | 1100 | -0.059 | 0.026 | 0.064 | 0.284 | 0.103 |
|---|
| KCNAB1 | | 1 | 1195 | 2214 | 2216 | -0.101 | 0.130 | 0.168 | 0.092 | -0.132 |
|---|
| SRPX | | 2 | 743 | 1165 | 1163 | -0.022 | 0.100 | 0.245 | 0.259 | 0.133 |
|---|
| CTNNB1 | | 43 | 25 | 83 | 81 | -0.113 | 0.187 | 0.159 | -0.090 | 0.239 |
|---|
| GNAZ | | 15 | 111 | 478 | 457 | 0.134 | -0.116 | 0.308 | 0.267 | 0.011 |
|---|
| MYC | | 72 | 10 | 1 | 8 | -0.101 | -0.169 | 0.188 | undef | -0.134 |
|---|
| GHR | | 35 | 34 | 83 | 83 | -0.112 | 0.174 | 0.090 | 0.176 | 0.201 |
|---|
| SRI | | 7 | 256 | 614 | 601 | 0.270 | -0.040 | 0.181 | 0.185 | 0.057 |
|---|
| PSEN2 | | 14 | 117 | 614 | 591 | 0.239 | -0.068 | -0.157 | 0.295 | 0.045 |
|---|
| DLG1 | | 6 | 301 | 457 | 452 | -0.016 | 0.173 | 0.244 | 0.017 | 0.123 |
|---|
| WT1 | | 33 | 37 | 1 | 21 | 0.254 | -0.039 | 0.036 | undef | 0.172 |
|---|
| INSM1 | | 23 | 66 | 570 | 545 | 0.135 | -0.184 | -0.188 | 0.237 | -0.032 |
|---|
| SP1 | | 72 | 10 | 83 | 77 | 0.222 | -0.254 | 0.239 | 0.020 | 0.082 |
|---|
| PLK1 | | 11 | 148 | 236 | 232 | 0.142 | -0.143 | 0.094 | -0.192 | -0.163 |
|---|
| GABPA | | 23 | 66 | 696 | 665 | 0.033 | -0.183 | 0.066 | 0.141 | -0.161 |
|---|
| SKP2 | | 29 | 45 | 1 | 23 | 0.092 | -0.043 | 0.237 | undef | -0.009 |
|---|
| CDK1 | | 63 | 15 | 83 | 79 | 0.265 | -0.195 | 0.106 | 0.088 | 0.031 |
|---|
| TCF7L2 | | 17 | 95 | 366 | 358 | -0.021 | 0.143 | 0.280 | undef | 0.101 |
|---|
| NR2F1 | | 25 | 59 | 83 | 92 | -0.252 | 0.113 | 0.133 | -0.116 | 0.207 |
|---|
| KPNA1 | | 9 | 196 | 141 | 147 | 0.007 | 0.152 | -0.083 | 0.073 | 0.086 |
|---|
| BRCA2 | | 41 | 28 | 236 | 222 | 0.206 | -0.124 | -0.066 | 0.233 | -0.116 |
|---|
| LEF1 | | 3 | 557 | 696 | 695 | -0.068 | 0.016 | -0.018 | 0.001 | 0.139 |
|---|
| ZHX1 | | 5 | 360 | 1364 | 1328 | 0.094 | -0.187 | undef | undef | undef |
|---|
| RAD51 | | 13 | 124 | 727 | 699 | 0.146 | -0.098 | 0.135 | -0.070 | 0.061 |
|---|
| TFDP1 | | 6 | 301 | 806 | 783 | 0.123 | -0.178 | 0.129 | undef | -0.065 |
|---|
| IGFBP5 | | 48 | 23 | 83 | 80 | -0.076 | 0.110 | 0.074 | 0.278 | 0.181 |
|---|
| MPP3 | | 4 | 440 | 1650 | 1612 | -0.095 | -0.007 | -0.098 | 0.087 | -0.046 |
|---|
| RTDR1 | | 5 | 360 | 1364 | 1328 | 0.135 | 0.098 | 0.222 | 0.125 | undef |
|---|
| SFN | | 25 | 59 | 478 | 454 | 0.141 | 0.270 | 0.023 | -0.102 | 0.101 |
|---|
| IGF2 | | 14 | 117 | 570 | 553 | -0.022 | 0.172 | 0.145 | 0.087 | 0.116 |
|---|
GO Enrichment output for subnetwork 6310 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 |  | 1.757E-10 | 4.292E-07 |
|---|
| protein sumoylation | GO:0016925 | | 2.469E-08 | 3.016E-05 |
|---|
| positive regulation of protein complex assembly | GO:0031334 | | 3.524E-07 | 2.87E-04 |
|---|
| Notch receptor processing | GO:0007220 | | 3.641E-07 | 2.224E-04 |
|---|
| pancreas development | GO:0031016 | | 5.551E-07 | 2.712E-04 |
|---|
| myoblast cell fate commitment | GO:0048625 | | 7.264E-07 | 2.958E-04 |
|---|
| amyloid precursor protein catabolic process | GO:0042987 | | 1.268E-06 | 4.426E-04 |
|---|
| positive regulation of insulin secretion | GO:0032024 | | 2.024E-06 | 6.181E-04 |
|---|
| middle ear morphogenesis | GO:0042474 | | 3.029E-06 | 8.221E-04 |
|---|
| amyloid precursor protein metabolic process | GO:0042982 | | 3.029E-06 | 7.399E-04 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 3.06E-06 | 6.795E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 1.342E-10 | 3.228E-07 |
|---|
| protein sumoylation | GO:0016925 | | 3.23E-08 | 3.885E-05 |
|---|
| positive regulation of protein complex assembly | GO:0031334 | | 3.59E-07 | 2.879E-04 |
|---|
| Notch receptor processing | GO:0007220 | | 4.461E-07 | 2.683E-04 |
|---|
| pancreas development | GO:0031016 | | 7.248E-07 | 3.488E-04 |
|---|
| myoblast cell fate commitment | GO:0048625 | | 8.899E-07 | 3.568E-04 |
|---|
| amyloid precursor protein catabolic process | GO:0042987 | | 1.553E-06 | 5.339E-04 |
|---|
| cell cycle arrest | GO:0007050 | | 1.676E-06 | 5.041E-04 |
|---|
| positive regulation of insulin secretion | GO:0032024 | | 2.479E-06 | 6.626E-04 |
|---|
| middle ear morphogenesis | GO:0042474 | | 3.708E-06 | 8.922E-04 |
|---|
| amyloid precursor protein metabolic process | GO:0042982 | | 3.708E-06 | 8.111E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein sumoylation | GO:0016925 | | 9.241E-08 | 2.125E-04 |
|---|
| positive regulation of protein complex assembly | GO:0031334 | | 3.113E-07 | 3.58E-04 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 5.477E-06 | 4.199E-03 |
|---|
| middle ear morphogenesis | GO:0042474 | | 5.477E-06 | 3.149E-03 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 7.268E-06 | 3.343E-03 |
|---|
| mammary gland development | GO:0030879 | | 1.285E-05 | 4.924E-03 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 1.597E-05 | 5.248E-03 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 1.659E-05 | 4.769E-03 |
|---|
| negative regulation of binding | GO:0051100 | | 2.362E-05 | 6.037E-03 |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 2.509E-05 | 5.77E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.488E-05 | 7.293E-03 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| amyloid precursor protein catabolic process | GO:0042987 | | 8.235E-07 | 1.518E-03 |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 1.595E-06 | 1.47E-03 |
|---|
| amyloid precursor protein metabolic process | GO:0042982 | | 2.865E-06 | 1.76E-03 |
|---|
| membrane protein ectodomain proteolysis | GO:0006509 | | 2.865E-06 | 1.32E-03 |
|---|
| glycoprotein catabolic process | GO:0006516 | | 1.773E-05 | 6.536E-03 |
|---|
| chromosome segregation | GO:0007059 | | 2.237E-05 | 6.873E-03 |
|---|
| cell cycle checkpoint | GO:0000075 | | 3.041E-05 | 8.006E-03 |
|---|
| insulin receptor signaling pathway | GO:0008286 | | 3.634E-05 | 8.372E-03 |
|---|
| regulation of cell growth | GO:0001558 | | 6.073E-05 | 0.01243546 |
|---|
| meiosis I | GO:0007127 | | 6.458E-05 | 0.01190172 |
|---|
| response to hormone stimulus | GO:0009725 | | 7.386E-05 | 0.01237438 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein sumoylation | GO:0016925 | | 9.241E-08 | 2.125E-04 |
|---|
| positive regulation of protein complex assembly | GO:0031334 | | 3.113E-07 | 3.58E-04 |
|---|
| Wnt receptor signaling pathway through beta-catenin | GO:0060070 | | 5.477E-06 | 4.199E-03 |
|---|
| middle ear morphogenesis | GO:0042474 | | 5.477E-06 | 3.149E-03 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 7.268E-06 | 3.343E-03 |
|---|
| mammary gland development | GO:0030879 | | 1.285E-05 | 4.924E-03 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 1.597E-05 | 5.248E-03 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 1.659E-05 | 4.769E-03 |
|---|
| negative regulation of binding | GO:0051100 | | 2.362E-05 | 6.037E-03 |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 2.509E-05 | 5.77E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.488E-05 | 7.293E-03 |
|---|
