Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 993-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1959 | 1.457e-02 | 1.148e-02 | 1.172e-01 |
|---|
| IPC-NIBC-129 | 0.2843 | 3.425e-02 | 5.009e-02 | 3.464e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2315 | 1.803e-02 | 2.848e-02 | 3.714e-01 |
|---|
| Loi_GPL570 | 0.2174 | 9.241e-02 | 1.034e-01 | 3.487e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1708 | 0.000e+00 | 4.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2125 | 7.750e-02 | 9.425e-02 | 4.956e-01 |
|---|
| Parker_GPL887 | 0.1322 | 3.686e-01 | 3.875e-01 | 4.032e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4110 | 4.037e-01 | 3.299e-01 | 9.327e-01 |
|---|
| Schmidt | 0.2122 | 2.117e-02 | 2.458e-02 | 2.430e-01 |
|---|
| Sotiriou | 0.3235 | 1.005e-02 | 7.689e-03 | 1.890e-01 |
|---|
| Van-De-Vijver | 0.2845 | 9.700e-04 | 1.396e-03 | 5.750e-02 |
|---|
| Zhang | 0.2672 | 1.140e-01 | 7.171e-02 | 2.451e-01 |
|---|
| Zhou | 0.4220 | 4.154e-02 | 2.958e-02 | 2.708e-01 |
|---|
Expression data for subnetwork 993-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 993-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| lmna | | 4 | 50 | 132 | 120 | 0.075 | 0.053 | 0.013 | -0.214 | 0.063 | 0.127 | 0.231 | 0.096 | -0.031 | 0.019 | 0.119 | -0.196 | 0.191 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 993-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.387E-11 | 5.489E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.898E-08 | 5.633E-05 |
|---|
| interphase | GO:0051325 | | 5.502E-08 | 4.218E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.842E-07 | 1.059E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 9.013E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 5.498E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.753E-12 | 1.161E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.343E-08 | 1.64E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.912E-08 | 4E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 9.952E-07 | 6.078E-04 |
|---|
| muscle cell migration | GO:0014812 | | 5.975E-06 | 2.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.076E-06 | 2.474E-03 |
|---|
| response to UV | GO:0009411 | | 1.117E-05 | 3.9E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 5.102E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.12E-05 | 5.754E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.215E-05 | 5.412E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.215E-05 | 4.92E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.035E-12 | 1.452E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.419E-08 | 1.707E-05 |
|---|
| interphase | GO:0051325 | | 1.66E-08 | 1.332E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 3.539E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 5.525E-04 |
|---|
| muscle cell migration | GO:0014812 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.463E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.937E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.337E-05 | 5.623E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.373E-05 | 5.19E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.753E-12 | 1.161E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.343E-08 | 1.64E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.912E-08 | 4E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 9.952E-07 | 6.078E-04 |
|---|
| muscle cell migration | GO:0014812 | | 5.975E-06 | 2.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.076E-06 | 2.474E-03 |
|---|
| response to UV | GO:0009411 | | 1.117E-05 | 3.9E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 5.102E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.12E-05 | 5.754E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.215E-05 | 5.412E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.215E-05 | 4.92E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.035E-12 | 1.452E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.419E-08 | 1.707E-05 |
|---|
| interphase | GO:0051325 | | 1.66E-08 | 1.332E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 3.539E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 5.525E-04 |
|---|
| muscle cell migration | GO:0014812 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.463E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.937E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.337E-05 | 5.623E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.373E-05 | 5.19E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-13 | 8.309E-10 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.163E-09 | 2.077E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 1.498E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.722E-08 | 1.537E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 2.646E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 3.967E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.164E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 6.31E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 6.044E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 2.61E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 2.939E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.379E-13 | 5.03E-10 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.058E-10 | 1.105E-06 |
|---|
| interphase | GO:0051325 | | 6.861E-10 | 8.343E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.869E-09 | 7.177E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 2.775E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 2.853E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 3.694E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 3.412E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 3.071E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 2.966E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.035E-12 | 1.452E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.419E-08 | 1.707E-05 |
|---|
| interphase | GO:0051325 | | 1.66E-08 | 1.332E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 3.539E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 5.525E-04 |
|---|
| muscle cell migration | GO:0014812 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.463E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.937E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.337E-05 | 5.623E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.373E-05 | 5.19E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.387E-11 | 5.489E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.898E-08 | 5.633E-05 |
|---|
| interphase | GO:0051325 | | 5.502E-08 | 4.218E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.842E-07 | 1.059E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 9.013E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 5.498E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.387E-11 | 5.489E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.898E-08 | 5.633E-05 |
|---|
| interphase | GO:0051325 | | 5.502E-08 | 4.218E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.842E-07 | 1.059E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 9.013E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 5.498E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| muscle cell migration | GO:0014812 | | 6.331E-06 | 0.01166884 |
|---|
| positive regulation of cell growth | GO:0030307 | | 9.493E-06 | 8.748E-03 |
|---|
| thymus development | GO:0048538 | | 9.493E-06 | 5.832E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 6.121E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.329E-05 | 4.897E-03 |
|---|
| thyroid gland development | GO:0030878 | | 1.771E-05 | 5.439E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.771E-05 | 4.662E-03 |
|---|
| developmental induction | GO:0031128 | | 1.771E-05 | 4.079E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 2.276E-05 | 4.66E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.276E-05 | 4.194E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 2.276E-05 | 3.813E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.387E-11 | 5.489E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.898E-08 | 5.633E-05 |
|---|
| interphase | GO:0051325 | | 5.502E-08 | 4.218E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.842E-07 | 1.059E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 9.013E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 5.498E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.607E-11 | 6.187E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 5.351E-05 |
|---|
| interphase | GO:0051325 | | 5.058E-08 | 4.001E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.789E-07 | 1.061E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.773E-06 | 8.413E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.506E-05 | 5.956E-03 |
|---|
| response to UV | GO:0009411 | | 2.119E-05 | 7.184E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.677E-05 | 7.941E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.567E-05 | 9.405E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.567E-05 | 8.465E-03 |
|---|
| induction of an organ | GO:0001759 | | 4.583E-05 | 9.887E-03 |
|---|
