Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 9610-11-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2283	1.915e-02	1.563e-02	1.445e-01
IPC-NIBC-129	0.1942	4.594e-02	6.636e-02	4.217e-01
Ivshina_GPL96-GPL97	0.2182	4.804e-03	8.513e-03	1.787e-01
Loi_GPL570	0.2970	2.988e-02	3.445e-02	1.433e-01
Loi_GPL96-GPL97	0.1785	1.560e-04	8.410e-04	3.514e-03
Parker_GPL1390	0.2735	5.997e-02	7.386e-02	4.344e-01
Parker_GPL887	0.1598	3.018e-01	3.198e-01	3.206e-01
Pawitan_GPL96-GPL97	0.2910	3.093e-01	2.395e-01	8.745e-01
Schmidt	0.2303	1.603e-02	1.826e-02	2.009e-01
Sotiriou	0.3511	6.327e-03	4.776e-03	1.443e-01
Van-De-Vijver	0.2631	3.227e-03	4.628e-03	1.251e-01
Zhang	0.2841	1.015e-01	6.192e-02	2.222e-01
Zhou	0.3546	1.239e-01	1.217e-01	5.920e-01

Expression data for subnetwork 9610-11-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Van-De-Vijver Zhang Zhou

Desmedt

Score for each gene in subnetwork 9610-11-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Van-De-Vijver	Zhang	Zhou
mlf1		7	30	56	49	0.027	0.224	0.053	0.047	0.169	0.128	0.021	-0.028	0.106	0.176	undef	0.098	0.141
rgs3		4	50	77	66	0.048	0.195	0.029	0.052	0.056	0.192	-0.052	-0.078	0.033	0.023	undef	0.100	-0.196
mlf1ip		5	40	77	64	0.182	0.147	0.186	0.144	0.242	0.266	0.005	0.345	0.182	0.197	undef	0.240	0.372
ywhaz		17	10	29	25	0.124	0.089	0.087	0.200	0.141	0.110	0.228	0.199	0.056	0.123	undef	0.103	0.213
prkci		14	15	31	26	0.065	0.104	0.012	0.170	0.112	0.088	-0.103	-0.170	0.196	0.128	0.049	0.124	0.149
ccnd1		92	2	18	12	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	undef	0.144	0.290
tsc1		58	4	18	13	0.049	0.012	-0.055	0.072	0.055	-0.144	-0.242	-0.196	0.006	0.010	0.095	-0.007	0.207
cdc2		96	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.162	0.297	0.336
hras		14	15	42	34	0.049	-0.030	0.094	0.210	0.160	0.195	0.022	0.245	0.086	0.208	0.180	0.003	0.197
rin1		1	116	162	169	-0.000	0.007	-0.017	0.073	0.074	-0.083	-0.239	0.089	0.097	-0.025	0.109	0.072	-0.195
map2k1		10	20	54	44	0.154	0.096	0.093	0.013	0.095	0.045	-0.223	0.207	0.082	0.096	undef	undef	0.230

GO Enrichment output for subnetwork 9610-11-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		1.492E-08	3.431E-05
cellular carbohydrate catabolic process	GO:0044275		2.45E-07	2.817E-04
fructose metabolic process	GO:0006000		8.282E-07	6.349E-04
alditol metabolic process	GO:0019400		1.681E-06	9.664E-04
sperm motility	GO:0030317		2.975E-06	1.368E-03
hexose biosynthetic process	GO:0019319		5.35E-06	2.051E-03
monosaccharide biosynthetic process	GO:0046364		7.245E-06	2.381E-03
polyol metabolic process	GO:0019751		8.728E-06	2.509E-03
alcohol biosynthetic process	GO:0046165		1.227E-05	3.135E-03
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.154E-03
positive regulation of Rho GTPase activity	GO:0032321		1.371E-05	2.867E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		4.373E-09	1.068E-05
cellular carbohydrate catabolic process	GO:0044275		1.245E-07	1.521E-04
fructose metabolic process	GO:0006000		2.435E-07	1.983E-04
alditol metabolic process	GO:0019400		1.124E-06	6.868E-04
sperm motility	GO:0030317		1.415E-06	6.915E-04
hexose biosynthetic process	GO:0019319		2.138E-06	8.706E-04
monosaccharide biosynthetic process	GO:0046364		3.072E-06	1.072E-03
alcohol biosynthetic process	GO:0046165		4.923E-06	1.503E-03
negative regulation of protein ubiquitination	GO:0031397		5.975E-06	1.622E-03
DNA replication. synthesis of RNA primer	GO:0006269		5.975E-06	1.46E-03
hemopoietic progenitor cell differentiation	GO:0002244		5.975E-06	1.327E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		7.187E-09	1.729E-05
cellular carbohydrate catabolic process	GO:0044275		2.045E-07	2.461E-04
fructose metabolic process	GO:0006000		3.997E-07	3.206E-04
alditol metabolic process	GO:0019400		1.438E-06	8.647E-04
sperm motility	GO:0030317		1.633E-06	7.856E-04
hexose biosynthetic process	GO:0019319		3.505E-06	1.406E-03
monosaccharide biosynthetic process	GO:0046364		5.034E-06	1.73E-03
polyol metabolic process	GO:0019751		7.492E-06	2.253E-03
alcohol biosynthetic process	GO:0046165		8.063E-06	2.156E-03
negative regulation of protein ubiquitination	GO:0031397		8.321E-06	2.002E-03
activation of Ras GTPase activity	GO:0032856		8.321E-06	1.82E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		4.373E-09	1.068E-05
cellular carbohydrate catabolic process	GO:0044275		1.245E-07	1.521E-04
fructose metabolic process	GO:0006000		2.435E-07	1.983E-04
alditol metabolic process	GO:0019400		1.124E-06	6.868E-04
sperm motility	GO:0030317		1.415E-06	6.915E-04
hexose biosynthetic process	GO:0019319		2.138E-06	8.706E-04
monosaccharide biosynthetic process	GO:0046364		3.072E-06	1.072E-03
alcohol biosynthetic process	GO:0046165		4.923E-06	1.503E-03
negative regulation of protein ubiquitination	GO:0031397		5.975E-06	1.622E-03
DNA replication. synthesis of RNA primer	GO:0006269		5.975E-06	1.46E-03
hemopoietic progenitor cell differentiation	GO:0002244		5.975E-06	1.327E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		7.187E-09	1.729E-05
cellular carbohydrate catabolic process	GO:0044275		2.045E-07	2.461E-04
fructose metabolic process	GO:0006000		3.997E-07	3.206E-04
alditol metabolic process	GO:0019400		1.438E-06	8.647E-04
sperm motility	GO:0030317		1.633E-06	7.856E-04
hexose biosynthetic process	GO:0019319		3.505E-06	1.406E-03
monosaccharide biosynthetic process	GO:0046364		5.034E-06	1.73E-03
polyol metabolic process	GO:0019751		7.492E-06	2.253E-03
alcohol biosynthetic process	GO:0046165		8.063E-06	2.156E-03
negative regulation of protein ubiquitination	GO:0031397		8.321E-06	2.002E-03
activation of Ras GTPase activity	GO:0032856		8.321E-06	1.82E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
negative regulation of protein ubiquitination	GO:0031397		4.142E-06	0.01478934
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.21E-06	0.01108799
hemopoietic progenitor cell differentiation	GO:0002244		6.21E-06	7.392E-03
regulation of Rac protein signal transduction	GO:0035020		6.21E-06	5.544E-03
establishment of apical/basal cell polarity	GO:0035089		6.21E-06	4.435E-03
regulation of phosphoprotein phosphatase activity	GO:0043666		8.691E-06	5.173E-03
regulation of focal adhesion formation	GO:0051893		8.691E-06	4.434E-03
eye photoreceptor cell differentiation	GO:0001754		8.691E-06	3.879E-03
regulation of synaptic transmission. GABAergic	GO:0032228		8.691E-06	3.448E-03
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.158E-05	4.137E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		1.158E-05	3.76E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
hemopoietic progenitor cell differentiation	GO:0002244		3.136E-06	0.0114404
positive regulation of cell-matrix adhesion	GO:0001954		3.136E-06	5.72E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		3.136E-06	3.813E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.703E-06	4.289E-03
regulation of focal adhesion formation	GO:0051893		4.703E-06	3.431E-03
regulation of synaptic transmission. GABAergic	GO:0032228		4.703E-06	2.859E-03
negative regulation of protein ubiquitination	GO:0031397		4.703E-06	2.451E-03
regulation of long-term neuronal synaptic plasticity	GO:0048169		6.582E-06	3.001E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		6.582E-06	2.668E-03
regulation of Rac protein signal transduction	GO:0035020		6.582E-06	2.401E-03
cell cortex	GO:0005938		8.086E-06	2.682E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		7.187E-09	1.729E-05
cellular carbohydrate catabolic process	GO:0044275		2.045E-07	2.461E-04
fructose metabolic process	GO:0006000		3.997E-07	3.206E-04
alditol metabolic process	GO:0019400		1.438E-06	8.647E-04
sperm motility	GO:0030317		1.633E-06	7.856E-04
hexose biosynthetic process	GO:0019319		3.505E-06	1.406E-03
monosaccharide biosynthetic process	GO:0046364		5.034E-06	1.73E-03
polyol metabolic process	GO:0019751		7.492E-06	2.253E-03
alcohol biosynthetic process	GO:0046165		8.063E-06	2.156E-03
negative regulation of protein ubiquitination	GO:0031397		8.321E-06	2.002E-03
activation of Ras GTPase activity	GO:0032856		8.321E-06	1.82E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		1.492E-08	3.431E-05
cellular carbohydrate catabolic process	GO:0044275		2.45E-07	2.817E-04
fructose metabolic process	GO:0006000		8.282E-07	6.349E-04
alditol metabolic process	GO:0019400		1.681E-06	9.664E-04
sperm motility	GO:0030317		2.975E-06	1.368E-03
hexose biosynthetic process	GO:0019319		5.35E-06	2.051E-03
monosaccharide biosynthetic process	GO:0046364		7.245E-06	2.381E-03
polyol metabolic process	GO:0019751		8.728E-06	2.509E-03
alcohol biosynthetic process	GO:0046165		1.227E-05	3.135E-03
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.154E-03
positive regulation of Rho GTPase activity	GO:0032321		1.371E-05	2.867E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		1.492E-08	3.431E-05
cellular carbohydrate catabolic process	GO:0044275		2.45E-07	2.817E-04
fructose metabolic process	GO:0006000		8.282E-07	6.349E-04
alditol metabolic process	GO:0019400		1.681E-06	9.664E-04
sperm motility	GO:0030317		2.975E-06	1.368E-03
hexose biosynthetic process	GO:0019319		5.35E-06	2.051E-03
monosaccharide biosynthetic process	GO:0046364		7.245E-06	2.381E-03
polyol metabolic process	GO:0019751		8.728E-06	2.509E-03
alcohol biosynthetic process	GO:0046165		1.227E-05	3.135E-03
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.154E-03
positive regulation of Rho GTPase activity	GO:0032321		1.371E-05	2.867E-03

Van-De-Vijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of long-term neuronal synaptic plasticity	GO:0048169		4.222E-06	7.781E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		4.222E-06	3.891E-03
regulation of Rac protein signal transduction	GO:0035020		4.222E-06	2.594E-03
establishment of cell polarity	GO:0030010		4.222E-06	1.945E-03
regulation of focal adhesion formation	GO:0051893		6.331E-06	2.334E-03
regulation of Rho GTPase activity	GO:0032319		6.331E-06	1.945E-03
positive regulation of Ras GTPase activity	GO:0032320		6.331E-06	1.667E-03
establishment or maintenance of apical/basal cell polarity	GO:0035088		6.331E-06	1.459E-03
regulation of synaptic transmission. GABAergic	GO:0032228		6.331E-06	1.297E-03
positive regulation of GTPase activity	GO:0043547		8.861E-06	1.633E-03
visual behavior	GO:0007632		8.861E-06	1.485E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		1.492E-08	3.431E-05
cellular carbohydrate catabolic process	GO:0044275		2.45E-07	2.817E-04
fructose metabolic process	GO:0006000		8.282E-07	6.349E-04
alditol metabolic process	GO:0019400		1.681E-06	9.664E-04
sperm motility	GO:0030317		2.975E-06	1.368E-03
hexose biosynthetic process	GO:0019319		5.35E-06	2.051E-03
monosaccharide biosynthetic process	GO:0046364		7.245E-06	2.381E-03
polyol metabolic process	GO:0019751		8.728E-06	2.509E-03
alcohol biosynthetic process	GO:0046165		1.227E-05	3.135E-03
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.154E-03
positive regulation of Rho GTPase activity	GO:0032321		1.371E-05	2.867E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
polyol catabolic process	GO:0046174		1.173E-08	2.784E-05
cellular carbohydrate catabolic process	GO:0044275		2.568E-07	3.047E-04
fructose metabolic process	GO:0006000		7.909E-07	6.256E-04
alditol metabolic process	GO:0019400		1.785E-06	1.059E-03
sperm motility	GO:0030317		3.005E-06	1.426E-03
hexose biosynthetic process	GO:0019319		5.176E-06	2.047E-03
monosaccharide biosynthetic process	GO:0046364		6.876E-06	2.331E-03
polyol metabolic process	GO:0019751		8.908E-06	2.642E-03
alcohol biosynthetic process	GO:0046165		1.13E-05	2.98E-03
negative regulation of protein ubiquitination	GO:0031397		1.166E-05	2.766E-03
establishment of apical/basal cell polarity	GO:0035089		1.166E-05	2.515E-03