Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9377-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1884 | 1.861e-02 | 1.514e-02 | 1.414e-01 |
|---|
| IPC-NIBC-129 | 0.2590 | 3.666e-02 | 5.346e-02 | 3.630e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2196 | 1.826e-02 | 2.882e-02 | 3.738e-01 |
|---|
| Loi_GPL570 | 0.2511 | 5.765e-02 | 6.534e-02 | 2.444e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1553 | 1.000e-06 | 1.700e-05 | 2.000e-06 |
|---|
| Parker_GPL1390 | 0.2119 | 5.834e-02 | 7.195e-02 | 4.281e-01 |
|---|
| Parker_GPL887 | 0.0120 | 3.859e-01 | 4.049e-01 | 4.245e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3712 | 9.780e-01 | 9.722e-01 | 1.000e+00 |
|---|
| Schmidt | 0.2322 | 1.337e-02 | 1.503e-02 | 1.767e-01 |
|---|
| Sotiriou | 0.2545 | 3.138e-02 | 2.488e-02 | 3.499e-01 |
|---|
| Van-De-Vijver | 0.2795 | 4.572e-03 | 6.541e-03 | 1.549e-01 |
|---|
| Zhang | 0.2951 | 1.441e-01 | 9.624e-02 | 2.976e-01 |
|---|
| Zhou | 0.3350 | 5.998e-02 | 4.798e-02 | 3.626e-01 |
|---|
Expression data for subnetwork 9377-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9377-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cox5a | | 1 | 116 | 292 | 292 | 0.058 | 0.072 | 0.141 | 0.130 | 0.121 | 0.030 | -0.045 | 0.225 | 0.132 | 0.049 | 0.115 | 0.068 | 0.128 |
|---|
| rbx1 | | 2 | 78 | 290 | 279 | -0.125 | 0.081 | 0.140 | 0.166 | 0.088 | 0.067 | 0.148 | 0.169 | 0.155 | -0.043 | -0.003 | 0.154 | 0.092 |
|---|
| pcna | | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| fen1 | | 9 | 22 | 133 | 112 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.242 | 0.056 | 0.114 |
|---|
| cops6 | | 1 | 116 | 292 | 292 | 0.019 | 0.063 | -0.006 | 0.105 | 0.115 | 0.096 | 0.236 | 0.116 | -0.014 | 0.091 | 0.121 | -0.149 | 0.206 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| lama4 | | 6 | 35 | 84 | 73 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.028 | 0.057 | 0.089 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 9377-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.538E-07 | 1.504E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 0.03112112 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.02545139 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.02171932 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.032E-05 | 0.02314785 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01928987 |
|---|
| regulation of embryonic development | GO:0045995 | | 5.032E-05 | 0.01653418 |
|---|
| thymus development | GO:0048538 | | 6.464E-05 | 0.01858535 |
|---|
| thyroid gland development | GO:0030878 | | 8.074E-05 | 0.02063307 |
|---|
| UV protection | GO:0009650 | | 8.074E-05 | 0.01856976 |
|---|
| developmental induction | GO:0031128 | | 8.074E-05 | 0.0168816 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.578E-07 | 3.856E-04 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 8.399E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 6.544E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 8.439E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 9.392E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.086E-05 | 0.01256489 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.516E-05 | 0.01227139 |
|---|
| thyroid gland development | GO:0030878 | | 3.77E-05 | 0.01151177 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.77E-05 | 0.01023268 |
|---|
| UV protection | GO:0009650 | | 3.77E-05 | 9.209E-03 |
|---|
| thymus development | GO:0048538 | | 3.77E-05 | 8.372E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.958E-07 | 4.712E-04 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 9.295E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 7.624E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 8.787E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.16E-05 | 0.01039368 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.776E-05 | 0.01112993 |
|---|
| induction of an organ | GO:0001759 | | 2.776E-05 | 9.54E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.156E-05 | 0.0124988 |
|---|
| thyroid gland development | GO:0030878 | | 4.236E-05 | 0.0113235 |
|---|
| UV protection | GO:0009650 | | 4.236E-05 | 0.01019115 |
|---|
| thymus development | GO:0048538 | | 4.236E-05 | 9.265E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.578E-07 | 3.856E-04 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 8.399E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 6.544E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 8.439E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 9.392E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.086E-05 | 0.01256489 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.516E-05 | 0.01227139 |
|---|
| thyroid gland development | GO:0030878 | | 3.77E-05 | 0.01151177 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.77E-05 | 0.01023268 |
|---|
| UV protection | GO:0009650 | | 3.77E-05 | 9.209E-03 |
|---|
| thymus development | GO:0048538 | | 3.77E-05 | 8.372E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.958E-07 | 4.712E-04 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 9.295E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 7.624E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 8.787E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.16E-05 | 0.01039368 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.776E-05 | 0.01112993 |
|---|
| induction of an organ | GO:0001759 | | 2.776E-05 | 9.54E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.156E-05 | 0.0124988 |
|---|
| thyroid gland development | GO:0030878 | | 4.236E-05 | 0.0113235 |
|---|
| UV protection | GO:0009650 | | 4.236E-05 | 0.01019115 |
|---|
| thymus development | GO:0048538 | | 4.236E-05 | 9.265E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.306E-08 | 8.235E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 1.016E-04 |
|---|
| MutLalpha complex binding | GO:0032405 | | 6.073E-06 | 7.228E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 6.073E-06 | 5.421E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 6.073E-06 | 4.337E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 6.073E-06 | 3.614E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.143E-06 | 3.134E-03 |
|---|
| response to UV | GO:0009411 | | 7.446E-06 | 3.324E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.105E-06 | 3.613E-03 |
|---|
| DNA replication factor C complex | GO:0005663 | | 9.105E-06 | 3.251E-03 |
|---|
| exodeoxyribonuclease activity | GO:0004529 | | 9.105E-06 | 2.956E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.462E-08 | 5.334E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.43E-08 | 6.257E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.177E-06 | 3.864E-03 |
|---|
| response to UV | GO:0009411 | | 3.65E-06 | 3.329E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 4.447E-06 | 3.244E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 4.447E-06 | 2.704E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 4.447E-06 | 2.317E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 2.028E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 2.702E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 6.667E-06 | 2.432E-03 |
|---|
| DNA replication factor C complex | GO:0005663 | | 6.667E-06 | 2.211E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.958E-07 | 4.712E-04 |
|---|
| muscle cell migration | GO:0014812 | | 7.727E-06 | 9.295E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 7.624E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 8.787E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.16E-05 | 0.01039368 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.776E-05 | 0.01112993 |
|---|
| induction of an organ | GO:0001759 | | 2.776E-05 | 9.54E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.156E-05 | 0.0124988 |
|---|
| thyroid gland development | GO:0030878 | | 4.236E-05 | 0.0113235 |
|---|
| UV protection | GO:0009650 | | 4.236E-05 | 0.01019115 |
|---|
| thymus development | GO:0048538 | | 4.236E-05 | 9.265E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 0.03112112 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.02545139 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.02171932 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.032E-05 | 0.02314785 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01928987 |
|---|
| regulation of embryonic development | GO:0045995 | | 5.032E-05 | 0.01653418 |
|---|
| thymus development | GO:0048538 | | 6.464E-05 | 0.01858535 |
|---|
| thyroid gland development | GO:0030878 | | 8.074E-05 | 0.02063307 |
|---|
| UV protection | GO:0009650 | | 8.074E-05 | 0.01856976 |
|---|
| developmental induction | GO:0031128 | | 8.074E-05 | 0.0168816 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 0.03112112 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.02545139 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.02171932 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.032E-05 | 0.02314785 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01928987 |
|---|
| regulation of embryonic development | GO:0045995 | | 5.032E-05 | 0.01653418 |
|---|
| thymus development | GO:0048538 | | 6.464E-05 | 0.01858535 |
|---|
| thyroid gland development | GO:0030878 | | 8.074E-05 | 0.02063307 |
|---|
| UV protection | GO:0009650 | | 8.074E-05 | 0.01856976 |
|---|
| developmental induction | GO:0031128 | | 8.074E-05 | 0.0168816 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| muscle cell migration | GO:0014812 | | 1.897E-05 | 0.0349658 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.844E-05 | 0.02620401 |
|---|
| thymus development | GO:0048538 | | 2.844E-05 | 0.01746934 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.844E-05 | 0.01310201 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.039E-05 | 0.01120329 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.978E-05 | 0.01221906 |
|---|
| UV protection | GO:0009650 | | 3.978E-05 | 0.01047348 |
|---|
| induction of an organ | GO:0001759 | | 3.978E-05 | 9.164E-03 |
|---|
| thyroid gland development | GO:0030878 | | 5.3E-05 | 0.01085296 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 5.3E-05 | 9.768E-03 |
|---|
| developmental induction | GO:0031128 | | 5.3E-05 | 8.88E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 0.03112112 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.02545139 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.02171932 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.032E-05 | 0.02314785 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01928987 |
|---|
| regulation of embryonic development | GO:0045995 | | 5.032E-05 | 0.01653418 |
|---|
| thymus development | GO:0048538 | | 6.464E-05 | 0.01858535 |
|---|
| thyroid gland development | GO:0030878 | | 8.074E-05 | 0.02063307 |
|---|
| UV protection | GO:0009650 | | 8.074E-05 | 0.01856976 |
|---|
| developmental induction | GO:0031128 | | 8.074E-05 | 0.0168816 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.433E-07 | 1.526E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.535E-05 | 0.03007849 |
|---|
| response to UV | GO:0009411 | | 3.096E-05 | 0.02448683 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.437E-05 | 0.02039212 |
|---|
| keratinocyte proliferation | GO:0043616 | | 4.579E-05 | 0.0217341 |
|---|
| induction of an organ | GO:0001759 | | 5.883E-05 | 0.02326781 |
|---|
| regulation of embryonic development | GO:0045995 | | 5.883E-05 | 0.01994383 |
|---|
| UV protection | GO:0009650 | | 7.348E-05 | 0.02179603 |
|---|
| thyroid gland development | GO:0030878 | | 8.974E-05 | 0.02366059 |
|---|
| thymus development | GO:0048538 | | 8.974E-05 | 0.02129453 |
|---|
| developmental induction | GO:0031128 | | 1.076E-04 | 0.02321172 |
|---|
