Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 83443-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1575 | 1.305e-02 | 1.013e-02 | 1.075e-01 |
|---|
| IPC-NIBC-129 | 0.2737 | 6.459e-02 | 9.183e-02 | 5.191e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2369 | 5.050e-03 | 8.911e-03 | 1.841e-01 |
|---|
| Loi_GPL570 | 0.2365 | 7.083e-02 | 7.983e-02 | 2.864e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1728 | 0.000e+00 | 7.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2712 | 3.907e-02 | 4.910e-02 | 3.433e-01 |
|---|
| Parker_GPL887 | 0.1165 | 4.645e-01 | 4.836e-01 | 5.205e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3514 | 4.671e-01 | 3.933e-01 | 9.571e-01 |
|---|
| Schmidt | 0.2601 | 1.809e-02 | 2.078e-02 | 2.184e-01 |
|---|
| Sotiriou | 0.2704 | 2.421e-02 | 1.903e-02 | 3.061e-01 |
|---|
| Van-De-Vijver | 0.2381 | 1.018e-03 | 1.465e-03 | 5.940e-02 |
|---|
| Zhang | 0.2768 | 1.107e-01 | 6.907e-02 | 2.391e-01 |
|---|
| Zhou | 0.4193 | 7.191e-02 | 6.076e-02 | 4.146e-01 |
|---|
Expression data for subnetwork 83443-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 83443-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| sfrs2 | | 1 | 116 | 178 | 185 | 0.031 | 0.186 | 0.060 | 0.091 | 0.103 | 0.080 | -0.223 | 0.197 | 0.175 | 0.036 | 0.099 | 0.047 | 0.301 |
|---|
| sf3b5 | | 1 | 116 | 178 | 185 | -0.108 | 0.153 | 0.155 | 0.041 | 0.085 | 0.212 | -0.122 | 0.105 | 0.116 | -0.012 | undef | 0.020 | -0.011 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| srpk1 | | 3 | 62 | 178 | 167 | 0.013 | 0.261 | 0.105 | 0.234 | 0.112 | 0.272 | -0.071 | 0.144 | 0.241 | 0.115 | 0.035 | 0.050 | 0.193 |
|---|
| u2af1 | | 2 | 78 | 178 | 173 | -0.037 | 0.160 | 0.147 | 0.045 | 0.111 | 0.190 | 0.120 | 0.214 | 0.257 | 0.007 | 0.132 | -0.070 | 0.159 |
|---|
| top2a | | 15 | 11 | 163 | 134 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.147 | 0.234 | 0.273 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 83443-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.907E-07 | 4.387E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.01149388 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 7.663E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.995E-06 | 5.747E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 4.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 4.226E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.498E-05 | 4.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 5.357E-03 |
|---|
| chromosome segregation | GO:0007059 | | 2.59E-05 | 5.957E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 5.841E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 4.92E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 3.554E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.364E-06 | 2.665E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.543E-06 | 3.197E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.664E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.259E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.22E-05 | 3.727E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 3.313E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.259E-05 | 3.077E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.568E-05 | 3.483E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 6.702E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 4.468E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 3.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 2.681E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 2.318E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 5.354E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.558E-05 | 4.685E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.558E-05 | 4.164E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.805E-05 | 4.343E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.002E-05 | 4.379E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 4.92E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 3.554E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.364E-06 | 2.665E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.543E-06 | 3.197E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.664E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.259E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.22E-05 | 3.727E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 3.313E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.259E-05 | 3.077E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.568E-05 | 3.483E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 6.702E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 4.468E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 3.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 2.681E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 2.318E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 5.354E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.558E-05 | 4.685E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.558E-05 | 4.164E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.805E-05 | 4.343E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.002E-05 | 4.379E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 8.667E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 6.009E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.142E-06 | 4.93E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 3.697E-03 |
|---|
| DNA topoisomerase activity | GO:0003916 | | 4.142E-06 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 3.696E-03 |
|---|
| DNA topological change | GO:0006265 | | 6.21E-06 | 3.168E-03 |
|---|
| chromosome segregation | GO:0007059 | | 6.462E-06 | 2.884E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 3.448E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 3.104E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 8.691E-06 | 2.821E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 8.681E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.448E-06 | 4.465E-03 |
|---|
| RS domain binding | GO:0050733 | | 3.763E-06 | 4.576E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 3.763E-06 | 3.432E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.763E-06 | 2.745E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 2.288E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 2.94E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.642E-06 | 2.573E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.642E-06 | 2.287E-03 |
|---|
| DNA topoisomerase activity | GO:0003916 | | 5.642E-06 | 2.058E-03 |
|---|
| chromosome segregation | GO:0007059 | | 5.775E-06 | 1.915E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 6.702E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 4.468E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 3.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 2.681E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 2.318E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 5.354E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.558E-05 | 4.685E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.558E-05 | 4.164E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.805E-05 | 4.343E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.002E-05 | 4.379E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.01149388 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 7.663E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.995E-06 | 5.747E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 4.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 4.226E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.498E-05 | 4.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 5.357E-03 |
|---|
| chromosome segregation | GO:0007059 | | 2.59E-05 | 5.957E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 5.841E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.01149388 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 7.663E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.995E-06 | 5.747E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 4.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 4.226E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.498E-05 | 4.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 5.357E-03 |
|---|
| chromosome segregation | GO:0007059 | | 2.59E-05 | 5.957E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 5.841E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| chromosome segregation | GO:0007059 | | 8.543E-06 | 0.01574429 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 1.181E-05 | 0.01088458 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01087825 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.771E-05 | 8.159E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.771E-05 | 6.527E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.771E-05 | 5.439E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.478E-05 | 6.523E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 5.708E-03 |
|---|
| regulation of mRNA processing | GO:0050684 | | 2.478E-05 | 5.074E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.302E-05 | 6.085E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 5.532E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.01149388 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.995E-06 | 7.663E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.995E-06 | 5.747E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 4.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 4.226E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.498E-05 | 4.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 5.357E-03 |
|---|
| chromosome segregation | GO:0007059 | | 2.59E-05 | 5.957E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 5.841E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.601E-07 | 6.171E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.06E-05 | 0.01257554 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.06E-05 | 8.384E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.06E-05 | 6.288E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 6.202E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.589E-05 | 6.284E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 7.536E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.223E-05 | 6.594E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.962E-05 | 7.81E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.962E-05 | 7.029E-03 |
|---|
| chromosome segregation | GO:0007059 | | 3.175E-05 | 6.85E-03 |
|---|
