Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7319-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2136 | 1.064e-02 | 8.037e-03 | 9.159e-02 |
|---|
| IPC-NIBC-129 | 0.2843 | 2.492e-02 | 3.687e-02 | 2.752e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2468 | 5.583e-03 | 9.767e-03 | 1.954e-01 |
|---|
| Loi_GPL570 | 0.2172 | 9.264e-02 | 1.036e-01 | 3.494e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1538 | 0.000e+00 | 4.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2666 | 7.043e-02 | 8.607e-02 | 4.723e-01 |
|---|
| Parker_GPL887 | 0.1034 | 3.307e-01 | 3.492e-01 | 3.563e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4042 | 5.254e-01 | 4.535e-01 | 9.726e-01 |
|---|
| Schmidt | 0.2189 | 2.266e-02 | 2.643e-02 | 2.543e-01 |
|---|
| Sotiriou | 0.3333 | 8.533e-03 | 6.497e-03 | 1.720e-01 |
|---|
| Van-De-Vijver | 0.3074 | 6.700e-04 | 9.640e-04 | 4.476e-02 |
|---|
| Zhang | 0.2631 | 1.474e-01 | 9.903e-02 | 3.031e-01 |
|---|
| Zhou | 0.4427 | 4.425e-02 | 3.217e-02 | 2.853e-01 |
|---|
Expression data for subnetwork 7319-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7319-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| map4 | | 6 | 35 | 18 | 20 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.054 | -0.074 | 0.302 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| ube2a | | 2 | 78 | 18 | 33 | 0.114 | 0.159 | 0.138 | 0.203 | 0.117 | 0.220 | 0.156 | 0.164 | 0.177 | 0.171 | 0.133 | 0.095 | 0.168 |
|---|
GO Enrichment output for subnetwork 7319-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.587E-09 | 1.285E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.037E-08 | 9.243E-05 |
|---|
| interphase | GO:0051325 | | 9.026E-08 | 6.92E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 1.561E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.605E-06 | 1.198E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.652E-05 | 6.332E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.652E-05 | 5.427E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.904E-05 | 5.474E-03 |
|---|
| response to UV | GO:0009411 | | 2.91E-05 | 7.437E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.463E-05 | 7.965E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.463E-05 | 7.241E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 2.992E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.939E-08 | 2.368E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.562E-08 | 5.344E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.232E-06 | 7.526E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.876E-06 | 3.359E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.031E-05 | 3.598E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 5.218E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.922E-05 | 4.696E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.47E-05 | 5.486E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.14E-08 | 3.777E-05 |
|---|
| interphase | GO:0051325 | | 3.673E-08 | 2.946E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.1E-07 | 6.615E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 8.758E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.01E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.498E-05 | 5.463E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 2.992E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.939E-08 | 2.368E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.562E-08 | 5.344E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.232E-06 | 7.526E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.876E-06 | 3.359E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.031E-05 | 3.598E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 5.218E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.922E-05 | 4.696E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.47E-05 | 5.486E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.14E-08 | 3.777E-05 |
|---|
| interphase | GO:0051325 | | 3.673E-08 | 2.946E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.1E-07 | 6.615E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 8.758E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.01E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.498E-05 | 5.463E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 3.255E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.163E-09 | 2.077E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 1.498E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.722E-08 | 1.537E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 2.646E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 3.967E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.164E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 6.31E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 6.044E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 2.61E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 2.939E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.058E-10 | 1.105E-06 |
|---|
| interphase | GO:0051325 | | 6.861E-10 | 8.343E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.869E-09 | 7.177E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 2.775E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 2.853E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 3.694E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 3.412E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 3.071E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 2.966E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.14E-08 | 3.777E-05 |
|---|
| interphase | GO:0051325 | | 3.673E-08 | 2.946E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.1E-07 | 6.615E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 8.758E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.01E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.498E-05 | 5.463E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 1.285E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.037E-08 | 9.243E-05 |
|---|
| interphase | GO:0051325 | | 9.026E-08 | 6.92E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 1.561E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.605E-06 | 1.198E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.652E-05 | 6.332E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.652E-05 | 5.427E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.904E-05 | 5.474E-03 |
|---|
| response to UV | GO:0009411 | | 2.91E-05 | 7.437E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.463E-05 | 7.965E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.463E-05 | 7.241E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 1.285E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.037E-08 | 9.243E-05 |
|---|
| interphase | GO:0051325 | | 9.026E-08 | 6.92E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 1.561E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.605E-06 | 1.198E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.652E-05 | 6.332E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.652E-05 | 5.427E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.904E-05 | 5.474E-03 |
|---|
| response to UV | GO:0009411 | | 2.91E-05 | 7.437E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.463E-05 | 7.965E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.463E-05 | 7.241E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| postreplication repair | GO:0006301 | | 8.861E-06 | 0.01633162 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.329E-05 | 0.01224278 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.329E-05 | 8.162E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.329E-05 | 6.121E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.329E-05 | 4.897E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.859E-05 | 5.711E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.859E-05 | 4.895E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 2.153E-05 | 4.961E-03 |
|---|
| negative regulation of microtubule depolymerization | GO:0007026 | | 2.478E-05 | 5.074E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.478E-05 | 4.566E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.478E-05 | 4.151E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 1.285E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.037E-08 | 9.243E-05 |
|---|
| interphase | GO:0051325 | | 9.026E-08 | 6.92E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 1.561E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.605E-06 | 1.198E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.652E-05 | 6.332E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.652E-05 | 5.427E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.904E-05 | 5.474E-03 |
|---|
| response to UV | GO:0009411 | | 2.91E-05 | 7.437E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.463E-05 | 7.965E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.463E-05 | 7.241E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.651E-09 | 1.341E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.071E-08 | 8.39E-05 |
|---|
| interphase | GO:0051325 | | 7.93E-08 | 6.273E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.548E-07 | 1.511E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.299E-06 | 1.091E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.514E-05 | 5.986E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.95E-05 | 6.611E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.269E-05 | 6.729E-03 |
|---|
| response to UV | GO:0009411 | | 2.743E-05 | 7.232E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.173E-05 | 7.531E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 4.228E-05 | 9.121E-03 |
|---|
