Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7306-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2174 | 7.230e-03 | 5.181e-03 | 6.717e-02 |
|---|
| IPC-NIBC-129 | 0.2813 | 2.342e-02 | 3.473e-02 | 2.627e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2656 | 1.722e-02 | 2.732e-02 | 3.629e-01 |
|---|
| Loi_GPL570 | 0.2630 | 4.866e-02 | 5.540e-02 | 2.138e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1574 | 0.000e+00 | 4.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2146 | 7.698e-02 | 9.366e-02 | 4.940e-01 |
|---|
| Parker_GPL887 | 0.1745 | 3.230e-01 | 3.414e-01 | 3.468e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3799 | 2.670e-01 | 2.007e-01 | 8.363e-01 |
|---|
| Schmidt | 0.2127 | 3.111e-02 | 3.701e-02 | 3.124e-01 |
|---|
| Sotiriou | 0.2971 | 1.559e-02 | 1.209e-02 | 2.417e-01 |
|---|
| Van-De-Vijver | 0.3119 | 3.460e-04 | 4.970e-04 | 2.829e-02 |
|---|
| Zhang | 0.2437 | 1.396e-01 | 9.249e-02 | 2.899e-01 |
|---|
| Zhou | 0.4795 | 5.537e-02 | 4.321e-02 | 3.410e-01 |
|---|
Expression data for subnetwork 7306-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7306-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| ccnb2 |   | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| gipc1 | | 1 | 116 | 84 | 93 | 0.079 | 0.069 | 0.055 | 0.102 | 0.087 | 0.290 | -0.045 | 0.277 | 0.118 | 0.047 | 0.054 | 0.029 | 0.133 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| lama4 | | 6 | 35 | 84 | 73 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.028 | 0.057 | 0.089 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| gapdh | | 6 | 35 | 18 | 20 | 0.071 | 0.312 | 0.102 | 0.145 | 0.165 | 0.172 | -0.253 | 0.288 | 0.064 | 0.213 | 0.225 | -0.088 | 0.235 |
|---|
| tk1 | | 7 | 30 | 84 | 67 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.105 | -0.100 | 0.257 | 0.204 | 0.142 | 0.293 | 0.164 | 0.222 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| slc2a1 | | 2 | 78 | 84 | 83 | 0.118 | 0.267 | 0.125 | 0.260 | 0.126 | 0.065 | -0.206 | 0.154 | 0.069 | 0.098 | 0.181 | -0.081 | 0.006 |
|---|
| tyrp1 | | 1 | 116 | 84 | 93 | -0.019 | 0.034 | 0.111 | 0.117 | 0.086 | -0.147 | 0.065 | 0.166 | 0.017 | 0.040 | 0.020 | 0.034 | 0.245 |
|---|
GO Enrichment output for subnetwork 7306-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 1.371E-05 | 0.03154099 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.371E-05 | 0.0157705 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.371E-05 | 0.01051366 |
|---|
| melanosome organization | GO:0032438 | | 1.371E-05 | 7.885E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.371E-05 | 6.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 5.257E-03 |
|---|
| glycolysis | GO:0006096 | | 1.917E-05 | 6.298E-03 |
|---|
| pigment granule organization | GO:0048753 | | 2.056E-05 | 5.91E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 6.013E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.975E-06 | 0.01459787 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.975E-06 | 7.299E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.975E-06 | 4.866E-03 |
|---|
| glycolysis | GO:0006096 | | 6.496E-06 | 3.967E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 8.959E-06 | 4.377E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.959E-06 | 3.648E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.18E-05 | 4.118E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.254E-05 | 3.828E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.254E-05 | 3.403E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.254E-05 | 3.063E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 3.71E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 0.01462147 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 6.077E-06 | 7.311E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 6.077E-06 | 4.874E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 3.655E-03 |
|---|
| glycolysis | GO:0006096 | | 6.172E-06 | 2.97E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 9.111E-06 | 3.654E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.135E-05 | 3.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.275E-05 | 3.834E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.275E-05 | 3.408E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.275E-05 | 3.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 3.716E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.975E-06 | 0.01459787 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.975E-06 | 7.299E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.975E-06 | 4.866E-03 |
|---|
| glycolysis | GO:0006096 | | 6.496E-06 | 3.967E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 8.959E-06 | 4.377E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.959E-06 | 3.648E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.18E-05 | 4.118E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.254E-05 | 3.828E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.254E-05 | 3.403E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.254E-05 | 3.063E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 3.71E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 0.01462147 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 6.077E-06 | 7.311E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 6.077E-06 | 4.874E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 3.655E-03 |
|---|
| glycolysis | GO:0006096 | | 6.172E-06 | 2.97E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 9.111E-06 | 3.654E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.135E-05 | 3.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.275E-05 | 3.834E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.275E-05 | 3.408E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.275E-05 | 3.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 3.716E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.061E-06 | 0.0180734 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.061E-06 | 9.037E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 5.061E-06 | 6.024E-03 |
|---|
| dendritic shaft | GO:0043198 | | 5.061E-06 | 4.518E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.589E-06 | 5.42E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 7.589E-06 | 4.517E-03 |
|---|
| melanosome organization | GO:0032438 | | 7.589E-06 | 3.871E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.062E-05 | 4.74E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.062E-05 | 4.214E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 1.062E-05 | 3.792E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.062E-05 | 3.448E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 4.447E-06 | 0.0162211 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 4.447E-06 | 8.111E-03 |
|---|
| dendritic shaft | GO:0043198 | | 4.447E-06 | 5.407E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 4.055E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 4.864E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 6.667E-06 | 4.054E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.667E-06 | 3.475E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.667E-06 | 3.04E-03 |
|---|
| melanocyte differentiation | GO:0030318 | | 9.33E-06 | 3.782E-03 |
|---|
| melanosome organization | GO:0032438 | | 9.33E-06 | 3.404E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 9.33E-06 | 3.094E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 0.01462147 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 6.077E-06 | 7.311E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 6.077E-06 | 4.874E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 3.655E-03 |
|---|
| glycolysis | GO:0006096 | | 6.172E-06 | 2.97E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 9.111E-06 | 3.654E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.135E-05 | 3.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.275E-05 | 3.834E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.275E-05 | 3.408E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.275E-05 | 3.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 3.716E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.371E-05 | 0.0157705 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.371E-05 | 0.01051366 |
|---|
| melanosome organization | GO:0032438 | | 1.371E-05 | 7.885E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.371E-05 | 6.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 5.257E-03 |
|---|
| glycolysis | GO:0006096 | | 1.917E-05 | 6.298E-03 |
|---|
| pigment granule organization | GO:0048753 | | 2.056E-05 | 5.91E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 6.013E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.371E-05 | 0.0157705 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.371E-05 | 0.01051366 |
|---|
| melanosome organization | GO:0032438 | | 1.371E-05 | 7.885E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.371E-05 | 6.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 5.257E-03 |
|---|
| glycolysis | GO:0006096 | | 1.917E-05 | 6.298E-03 |
|---|
| pigment granule organization | GO:0048753 | | 2.056E-05 | 5.91E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 6.013E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.276E-05 | 0.04194269 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.276E-05 | 0.02097134 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.276E-05 | 0.0139809 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.276E-05 | 0.01048567 |
|---|
| thymus development | GO:0048538 | | 2.276E-05 | 8.389E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.276E-05 | 6.99E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.184E-05 | 8.383E-03 |
|---|
| vascular endothelial growth factor receptor signaling pathway | GO:0048010 | | 3.184E-05 | 7.335E-03 |
|---|
| regulation of cell adhesion | GO:0030155 | | 3.926E-05 | 8.039E-03 |
|---|
| negative regulation of proteolysis | GO:0045861 | | 4.242E-05 | 7.819E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.371E-05 | 0.0157705 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.371E-05 | 0.01051366 |
|---|
| melanosome organization | GO:0032438 | | 1.371E-05 | 7.885E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.371E-05 | 6.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 5.257E-03 |
|---|
| glycolysis | GO:0006096 | | 1.917E-05 | 6.298E-03 |
|---|
| pigment granule organization | GO:0048753 | | 2.056E-05 | 5.91E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 2.782E-07 | 6.601E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 6.348E-07 | 7.532E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.185E-06 | 9.37E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.739E-06 | 1.032E-03 |
|---|
| alcohol catabolic process | GO:0046164 | | 2.71E-06 | 1.286E-03 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 4.951E-06 | 1.958E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.277E-05 | 4.328E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.277E-05 | 3.787E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.277E-05 | 3.366E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.277E-05 | 3.029E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.914E-05 | 4.128E-03 |
|---|
