Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7153-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2694 | 1.251e-02 | 9.657e-03 | 1.041e-01 |
|---|
| IPC-NIBC-129 | 0.2744 | 2.721e-02 | 4.014e-02 | 2.938e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2390 | 2.468e-02 | 3.791e-02 | 4.327e-01 |
|---|
| Loi_GPL570 | 0.1915 | 1.318e-01 | 1.458e-01 | 4.468e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1812 | 0.000e+00 | 7.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.1979 | 1.155e-01 | 1.376e-01 | 5.991e-01 |
|---|
| Parker_GPL887 | 0.0666 | 2.330e-01 | 2.495e-01 | 2.363e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3909 | 7.114e-01 | 6.558e-01 | 9.955e-01 |
|---|
| Schmidt | 0.1838 | 2.355e-02 | 2.755e-02 | 2.610e-01 |
|---|
| Sotiriou | 0.2769 | 2.175e-02 | 1.704e-02 | 2.893e-01 |
|---|
| Van-De-Vijver | 0.3011 | 9.510e-04 | 1.369e-03 | 5.677e-02 |
|---|
| Zhang | 0.2607 | 9.734e-02 | 5.876e-02 | 2.145e-01 |
|---|
| Zhou | 0.4231 | 5.007e-02 | 3.785e-02 | 3.151e-01 |
|---|
Expression data for subnetwork 7153-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7153-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| krt18 | | 6 | 35 | 184 | 166 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | -0.024 | -0.114 | 0.222 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| plau | | 1 | 116 | 203 | 212 | 0.184 | 0.370 | 0.056 | 0.028 | 0.058 | 0.094 | 0.306 | 0.164 | 0.055 | 0.001 | 0.161 | 0.044 | 0.337 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| serpine1 | | 1 | 116 | 203 | 212 | 0.188 | 0.123 | -0.021 | -0.062 | 0.104 | 0.056 | undef | 0.103 | -0.132 | -0.006 | 0.135 | -0.044 | -0.141 |
|---|
| top2a | | 15 | 11 | 163 | 134 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.147 | 0.234 | 0.273 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| troap | | 1 | 116 | 203 | 212 | 0.078 | 0.179 | 0.137 | 0.149 | 0.119 | 0.178 | 0.538 | 0.144 | 0.284 | 0.117 | 0.279 | 0.242 | 0.488 |
|---|
GO Enrichment output for subnetwork 7153-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 |  | 2.197E-08 | 5.052E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 2.275E-07 | 1.745E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 4.244E-07 | 2.44E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 9.584E-07 | 4.409E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 1.615E-06 | 6.189E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.494E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 7.841E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.841E-06 | 2.004E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.175E-05 | 2.704E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.439E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 5.324E-09 | 1.301E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 3.449E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 1.031E-07 | 8.393E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.726E-07 | 1.054E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.928E-07 | 1.919E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 6.125E-07 | 2.494E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 7.947E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 3.005E-06 | 9.176E-04 |
|---|
| muscle cell migration | GO:0014812 | | 3.005E-06 | 8.157E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.506E-06 | 1.101E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.306E-06 | 1.4E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 5.221E-09 | 1.256E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 3.24E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 1.011E-07 | 8.106E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.693E-07 | 1.018E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.409E-07 | 1.641E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 5.409E-07 | 2.169E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 7.678E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 9.01E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 8.009E-04 |
|---|
| muscle cell migration | GO:0014812 | | 2.996E-06 | 7.208E-04 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.287E-06 | 1.375E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 5.324E-09 | 1.301E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 3.449E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 1.031E-07 | 8.393E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.726E-07 | 1.054E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.928E-07 | 1.919E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 6.125E-07 | 2.494E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 7.947E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 3.005E-06 | 9.176E-04 |
|---|
| muscle cell migration | GO:0014812 | | 3.005E-06 | 8.157E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.506E-06 | 1.101E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.306E-06 | 1.4E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 5.221E-09 | 1.256E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 3.24E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 1.011E-07 | 8.106E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.693E-07 | 1.018E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.409E-07 | 1.641E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 5.409E-07 | 2.169E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 7.678E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 9.01E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 8.009E-04 |
|---|
| muscle cell migration | GO:0014812 | | 2.996E-06 | 7.208E-04 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.287E-06 | 1.375E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 3.149E-09 | 1.125E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 2.607E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 5.717E-08 | 6.806E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 8.791E-08 | 7.848E-05 |
|---|
| regulation of blood coagulation | GO:0030193 | | 1.787E-07 | 1.277E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 2.774E-07 | 1.651E-04 |
|---|
| microtubule organizing center part | GO:0044450 | | 7.024E-07 | 3.583E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 1.054E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 3.314E-06 | 1.315E-03 |
|---|
| DNA topoisomerase activity | GO:0003916 | | 3.314E-06 | 1.183E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 1.613E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.094E-09 | 2.223E-05 |
|---|
| microtubule organizing center part | GO:0044450 | | 3.785E-07 | 6.903E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.392E-07 | 1.142E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 2.053E-06 | 1.872E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 2.053E-06 | 1.498E-03 |
|---|
| origin recognition complex | GO:0000808 | | 2.053E-06 | 1.248E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.053E-06 | 1.07E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.079E-06 | 1.404E-03 |
|---|
| DNA topoisomerase activity | GO:0003916 | | 3.079E-06 | 1.248E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.463E-06 | 1.263E-03 |
|---|
| fibrinolysis | GO:0042730 | | 4.309E-06 | 1.429E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 5.221E-09 | 1.256E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 3.24E-05 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 1.011E-07 | 8.106E-05 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.693E-07 | 1.018E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.409E-07 | 1.641E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 5.409E-07 | 2.169E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 7.678E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 9.01E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 8.009E-04 |
|---|
| muscle cell migration | GO:0014812 | | 2.996E-06 | 7.208E-04 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.287E-06 | 1.375E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 2.197E-08 | 5.052E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 2.275E-07 | 1.745E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 4.244E-07 | 2.44E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 9.584E-07 | 4.409E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 1.615E-06 | 6.189E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.494E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 7.841E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.841E-06 | 2.004E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.175E-05 | 2.704E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.439E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 2.197E-08 | 5.052E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 2.275E-07 | 1.745E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 4.244E-07 | 2.44E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 9.584E-07 | 4.409E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 1.615E-06 | 6.189E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.494E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 7.841E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.841E-06 | 2.004E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.175E-05 | 2.704E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.439E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 5.765E-08 | 1.062E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 1.234E-07 | 1.137E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 3.735E-07 | 2.294E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 5.739E-07 | 2.644E-04 |
|---|
| coagulation | GO:0050817 | | 7.238E-06 | 2.668E-03 |
|---|
| hemostasis | GO:0007599 | | 9.25E-06 | 2.841E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.181E-05 | 3.11E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 1.181E-05 | 2.721E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 3.626E-03 |
|---|
| regulation of body fluid levels | GO:0050878 | | 2.221E-05 | 4.093E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 4.151E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 2.197E-08 | 5.052E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 2.275E-07 | 1.745E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 4.244E-07 | 2.44E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 9.584E-07 | 4.409E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 1.615E-06 | 6.189E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.494E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 7.841E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.841E-06 | 2.004E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.175E-05 | 2.704E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.439E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fibrinolysis | GO:0042730 | | 2.174E-08 | 5.158E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.338E-07 | 1.587E-04 |
|---|
| negative regulation of blood coagulation | GO:0030195 | | 3.46E-07 | 2.737E-04 |
|---|
| negative regulation of coagulation | GO:0050819 | | 5.978E-07 | 3.546E-04 |
|---|
| regulation of blood coagulation | GO:0030193 | | 1.245E-06 | 5.909E-04 |
|---|
| regulation of coagulation | GO:0050818 | | 2.011E-06 | 7.952E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 7.724E-06 | 2.619E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.724E-06 | 2.291E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.055E-06 | 2.124E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.62E-05 | 3.845E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.62E-05 | 3.496E-03 |
|---|
