Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6993-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1794 | 1.172e-02 | 8.967e-03 | 9.886e-02 |
|---|
| IPC-NIBC-129 | 0.2666 | 6.411e-02 | 9.119e-02 | 5.169e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2421 | 7.634e-03 | 1.300e-02 | 2.343e-01 |
|---|
| Loi_GPL570 | 0.2083 | 1.048e-01 | 1.168e-01 | 3.815e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1711 | 1.000e-06 | 1.100e-05 | 1.000e-06 |
|---|
| Parker_GPL1390 | 0.2522 | 7.874e-02 | 9.569e-02 | 4.996e-01 |
|---|
| Parker_GPL887 | 0.0311 | 4.075e-01 | 4.266e-01 | 4.511e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3896 | 8.999e-01 | 8.761e-01 | 9.999e-01 |
|---|
| Schmidt | 0.2111 | 1.787e-02 | 2.052e-02 | 2.166e-01 |
|---|
| Sotiriou | 0.2742 | 2.272e-02 | 1.783e-02 | 2.961e-01 |
|---|
| Van-De-Vijver | 0.2387 | 1.116e-03 | 1.606e-03 | 6.315e-02 |
|---|
| Zhang | 0.2775 | 1.136e-01 | 7.139e-02 | 2.444e-01 |
|---|
| Zhou | 0.4142 | 5.063e-02 | 3.842e-02 | 3.179e-01 |
|---|
Expression data for subnetwork 6993-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6993-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| dynlt1 | | 1 | 116 | 265 | 265 | -0.029 | 0.190 | 0.104 | 0.126 | 0.051 | 0.045 | -0.335 | 0.052 | -0.001 | -0.095 | -0.064 | 0.105 | 0.100 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| dync1i1 | | 1 | 116 | 265 | 265 | -0.058 | 0.102 | 0.055 | 0.124 | 0.054 | 0.147 | -0.008 | 0.056 | 0.082 | 0.036 | 0.072 | 0.166 | -0.245 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| dnm2 | | 3 | 62 | 64 | 61 | 0.089 | 0.127 | 0.114 | -0.049 | 0.065 | 0.251 | 0.291 | 0.177 | -0.039 | -0.048 | 0.078 | -0.044 | 0.262 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| top2a | | 15 | 11 | 163 | 134 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.147 | 0.234 | 0.273 |
|---|
| dynll1 | | 1 | 116 | 265 | 265 | -0.012 | 0.108 | 0.088 | 0.087 | 0.098 | 0.124 | 0.134 | 0.128 | 0.113 | 0.093 | 0.016 | 0.074 | 0.360 |
|---|
GO Enrichment output for subnetwork 6993-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 3.06E-10 | 7.037E-07 |
|---|
| interphase | GO:0051325 | | 3.522E-10 | 4.051E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 1.493E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.893E-09 | 3.389E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.197E-07 | 5.506E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.901E-06 | 7.288E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.466E-06 | 8.102E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.854E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 2.569E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 3.354E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.384E-11 | 1.56E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.593E-10 | 5.611E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.383E-09 | 1.94E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.043E-08 | 1.859E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 6.16E-07 | 3.01E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 7.906E-07 | 3.219E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 1.493E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.743E-06 | 1.448E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.112E-06 | 1.93E-03 |
|---|
| response to UV | GO:0009411 | | 7.871E-06 | 1.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 2.946E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.112E-11 | 1.952E-07 |
|---|
| interphase | GO:0051325 | | 9.81E-11 | 1.18E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 5.334E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.234E-09 | 1.945E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.128E-08 | 1.986E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 7.792E-07 | 3.125E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 9.999E-07 | 3.437E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.406E-06 | 1.626E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 1.489E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 1.34E-03 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 1.944E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.384E-11 | 1.56E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.593E-10 | 5.611E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.383E-09 | 1.94E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.043E-08 | 1.859E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 6.16E-07 | 3.01E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 7.906E-07 | 3.219E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 1.493E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.743E-06 | 1.448E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.112E-06 | 1.93E-03 |
|---|
| response to UV | GO:0009411 | | 7.871E-06 | 1.923E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 2.946E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.112E-11 | 1.952E-07 |
|---|
| interphase | GO:0051325 | | 9.81E-11 | 1.18E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 5.334E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.234E-09 | 1.945E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.128E-08 | 1.986E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 7.792E-07 | 3.125E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 9.999E-07 | 3.437E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.406E-06 | 1.626E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 1.489E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 1.34E-03 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 1.944E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.115E-11 | 3.98E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.667E-10 | 2.977E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.982E-10 | 4.739E-07 |
|---|
| cytoplasmic dynein complex | GO:0005868 | | 3.093E-09 | 2.761E-06 |
|---|
| dynein complex | GO:0030286 | | 3.411E-09 | 2.436E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 1.03E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.7E-08 | 1.377E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 2.273E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.044E-07 | 4.143E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 4.006E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 2.213E-07 | 7.183E-05 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.103E-12 | 3.321E-08 |
|---|
| interphase | GO:0051325 | | 1.058E-11 | 1.93E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.553E-10 | 1.889E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.532E-10 | 2.309E-07 |
|---|
| dynein complex | GO:0030286 | | 1.754E-09 | 1.28E-06 |
|---|
| cytoplasmic dynein complex | GO:0005868 | | 5.226E-09 | 3.177E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.462E-08 | 7.62E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.699E-08 | 7.749E-06 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.481E-08 | 3.843E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.836E-08 | 3.588E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.457E-07 | 4.833E-05 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.112E-11 | 1.952E-07 |
|---|
| interphase | GO:0051325 | | 9.81E-11 | 1.18E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 5.334E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.234E-09 | 1.945E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.128E-08 | 1.986E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 7.792E-07 | 3.125E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 9.999E-07 | 3.437E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.406E-06 | 1.626E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.571E-06 | 1.489E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 5.571E-06 | 1.34E-03 |
|---|
| response to UV | GO:0009411 | | 8.889E-06 | 1.944E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.06E-10 | 7.037E-07 |
|---|
| interphase | GO:0051325 | | 3.522E-10 | 4.051E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 1.493E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.893E-09 | 3.389E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.197E-07 | 5.506E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.901E-06 | 7.288E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.466E-06 | 8.102E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.854E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 2.569E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 3.354E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.06E-10 | 7.037E-07 |
|---|
| interphase | GO:0051325 | | 3.522E-10 | 4.051E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 1.493E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.893E-09 | 3.389E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.197E-07 | 5.506E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.901E-06 | 7.288E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.466E-06 | 8.102E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.854E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 2.569E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 3.354E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 1.181E-05 | 0.02176916 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01631737 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 0.01522069 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 0.01521184 |
|---|
| positive regulation of cell size | GO:0045793 | | 4.242E-05 | 0.01563736 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.242E-05 | 0.01303113 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 4.242E-05 | 0.01116954 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 5.3E-05 | 0.01220958 |
|---|
| synaptic vesicle transport | GO:0048489 | | 5.3E-05 | 0.01085296 |
|---|
| microtubule-based transport | GO:0010970 | | 6.474E-05 | 0.01193131 |
|---|
| skin development | GO:0043588 | | 6.474E-05 | 0.01084665 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.06E-10 | 7.037E-07 |
|---|
| interphase | GO:0051325 | | 3.522E-10 | 4.051E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 1.493E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.893E-09 | 3.389E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.197E-07 | 5.506E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.901E-06 | 7.288E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.466E-06 | 8.102E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.854E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 2.569E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 3.354E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.028E-10 | 7.185E-07 |
|---|
| interphase | GO:0051325 | | 3.48E-10 | 4.129E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.182E-09 | 1.726E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.433E-09 | 3.223E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.213E-07 | 5.757E-05 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 2.299E-06 | 9.092E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.92E-06 | 9.898E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.06E-05 | 3.144E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.06E-05 | 2.795E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.134E-05 | 2.692E-03 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 3.445E-03 |
|---|
