Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6794-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1970 | 8.471e-03 | 6.204e-03 | 7.634e-02 |
|---|
| IPC-NIBC-129 | 0.2535 | 9.618e-02 | 1.338e-01 | 6.411e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2579 | 1.898e-02 | 2.985e-02 | 3.810e-01 |
|---|
| Loi_GPL570 | 0.2496 | 5.890e-02 | 6.672e-02 | 2.485e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1537 | 2.000e-06 | 2.400e-05 | 5.000e-06 |
|---|
| Parker_GPL1390 | 0.2101 | 1.031e-01 | 1.235e-01 | 5.687e-01 |
|---|
| Parker_GPL887 | 0.0901 | 3.662e-01 | 3.851e-01 | 4.002e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3526 | 5.893e-01 | 5.212e-01 | 9.841e-01 |
|---|
| Schmidt | 0.1919 | 2.392e-02 | 2.800e-02 | 2.636e-01 |
|---|
| Sotiriou | 0.3221 | 1.028e-02 | 7.867e-03 | 1.914e-01 |
|---|
| Van-De-Vijver | 0.2086 | 6.210e-04 | 8.940e-04 | 4.251e-02 |
|---|
| Zhang | 0.2598 | 1.475e-01 | 9.911e-02 | 3.033e-01 |
|---|
| Zhou | 0.4469 | 7.114e-02 | 5.991e-02 | 4.114e-01 |
|---|
Expression data for subnetwork 6794-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6794-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| cep55 | | 6 | 35 | 207 | 187 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.189 | 0.115 | 0.330 |
|---|
| krt18 | | 6 | 35 | 184 | 166 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | -0.024 | -0.114 | 0.222 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| pcnt | | 4 | 50 | 207 | 197 | -0.013 | 0.258 | 0.082 | -0.128 | 0.086 | 0.111 | 0.033 | 0.154 | 0.087 | 0.042 | 0.086 | 0.252 | 0.255 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| rps6ka3 | | 4 | 50 | 207 | 197 | 0.022 | 0.223 | 0.086 | 0.078 | 0.077 | 0.113 | -0.212 | 0.155 | 0.142 | -0.004 | -0.084 | 0.057 | -0.071 |
|---|
| stk11 | | 1 | 116 | 241 | 242 | -0.071 | 0.026 | 0.071 | 0.036 | 0.060 | 0.039 | 0.307 | 0.103 | -0.020 | 0.261 | -0.013 | -0.050 | 0.124 |
|---|
GO Enrichment output for subnetwork 6794-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.907E-07 | 4.387E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 4.809E-07 | 5.53E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 5.448E-07 | 4.177E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.169E-06 | 1.247E-03 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 2.463E-06 | 1.133E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.817E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.445E-05 | 3.323E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.54E-05 | 3.22E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 2.113E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.783E-07 | 3.4E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 3.255E-07 | 2.651E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 3.138E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 5.165E-06 | 2.524E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.704E-06 | 2.689E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 8.888E-06 | 2.714E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 8.888E-06 | 2.412E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.044E-05 | 2.55E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.078E-05 | 2.394E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 2.865E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 4.135E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 3.237E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 3.655E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.924E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 2.475E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 2.268E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.015E-05 | 3.052E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.015E-05 | 2.712E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.199E-05 | 2.884E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.275E-05 | 2.789E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 2.113E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.783E-07 | 3.4E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 3.255E-07 | 2.651E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 3.138E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 5.165E-06 | 2.524E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.704E-06 | 2.689E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 8.888E-06 | 2.714E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 8.888E-06 | 2.412E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.044E-05 | 2.55E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.078E-05 | 2.394E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 2.865E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 4.135E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 3.237E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 3.655E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.924E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 2.475E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 2.268E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.015E-05 | 3.052E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.015E-05 | 2.712E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.199E-05 | 2.884E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.275E-05 | 2.789E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 8.667E-05 |
|---|
| microtubule organizing center part | GO:0044450 | | 1.002E-06 | 1.789E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 4.006E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 3.697E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 4.435E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.21E-06 | 3.696E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 4.434E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 3.879E-03 |
|---|
| centriolar satellite | GO:0034451 | | 8.691E-06 | 3.448E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.178E-06 | 3.278E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.158E-05 | 3.76E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 8.681E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.448E-06 | 4.465E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 3.763E-06 | 4.576E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.763E-06 | 3.432E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 2.745E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 3.431E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.642E-06 | 2.94E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.642E-06 | 2.573E-03 |
|---|
| centriolar satellite | GO:0034451 | | 7.896E-06 | 3.201E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.002E-06 | 3.284E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.052E-05 | 3.49E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 2.865E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 4.135E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 3.237E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 3.655E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.924E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 2.475E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 2.268E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.015E-05 | 3.052E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.015E-05 | 2.712E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.199E-05 | 2.884E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.275E-05 | 2.789E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 4.809E-07 | 5.53E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 5.448E-07 | 4.177E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.169E-06 | 1.247E-03 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 2.463E-06 | 1.133E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.817E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.445E-05 | 3.323E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.54E-05 | 3.22E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 4.809E-07 | 5.53E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 5.448E-07 | 4.177E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.169E-06 | 1.247E-03 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 2.463E-06 | 1.133E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.817E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.445E-05 | 3.323E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.54E-05 | 3.22E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.137E-05 | 0.03939172 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.276E-05 | 0.02097134 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.276E-05 | 0.0139809 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.276E-05 | 0.01048567 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.276E-05 | 8.389E-03 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.285E-05 | 7.019E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.184E-05 | 8.383E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.184E-05 | 7.335E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.242E-05 | 8.687E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 4.242E-05 | 7.819E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 5.451E-05 | 9.133E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 4.809E-07 | 5.53E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 5.448E-07 | 4.177E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.169E-06 | 1.247E-03 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 2.463E-06 | 1.133E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.817E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.445E-05 | 3.323E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.54E-05 | 3.22E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.338E-07 | 3.174E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.724E-06 | 9.165E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.055E-06 | 6.372E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.158E-05 | 6.87E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.62E-05 | 7.69E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.159E-05 | 8.54E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.159E-05 | 7.32E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.467E-05 | 0.01028294 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.467E-05 | 9.14E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 8.226E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.235E-05 | 9.135E-03 |
|---|
