Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 64837-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2005 | 1.173e-02 | 8.977e-03 | 9.893e-02 |
|---|
| IPC-NIBC-129 | 0.2459 | 4.120e-02 | 5.980e-02 | 3.927e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2421 | 1.165e-02 | 1.912e-02 | 2.960e-01 |
|---|
| Loi_GPL570 | 0.2578 | 5.242e-02 | 5.957e-02 | 2.268e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1648 | 4.000e-06 | 3.900e-05 | 1.300e-05 |
|---|
| Parker_GPL1390 | 0.2328 | 1.295e-01 | 1.533e-01 | 6.299e-01 |
|---|
| Parker_GPL887 | 0.0030 | 3.586e-01 | 3.774e-01 | 3.908e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3657 | 9.979e-01 | 9.973e-01 | 1.000e+00 |
|---|
| Schmidt | 0.1755 | 1.492e-02 | 1.691e-02 | 1.910e-01 |
|---|
| Sotiriou | 0.2971 | 1.560e-02 | 1.209e-02 | 2.418e-01 |
|---|
| Van-De-Vijver | 0.2710 | 1.179e-03 | 1.696e-03 | 6.549e-02 |
|---|
| Zhang | 0.2885 | 1.248e-01 | 8.035e-02 | 2.643e-01 |
|---|
| Zhou | 0.4111 | 6.309e-02 | 5.126e-02 | 3.767e-01 |
|---|
Expression data for subnetwork 64837-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 64837-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| klc2 | | 2 | 78 | 34 | 42 | 0.036 | -0.030 | 0.148 | 0.074 | 0.099 | 0.019 | 0.066 | 0.141 | 0.025 | 0.198 | undef | 0.098 | 0.185 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| ywhaq | | 5 | 40 | 1 | 9 | 0.129 | 0.110 | 0.049 | 0.116 | 0.071 | 0.160 | -0.210 | 0.038 | 0.007 | 0.054 | 0.072 | 0.138 | 0.187 |
|---|
| cdc25b | | 4 | 50 | 140 | 128 | 0.197 | 0.107 | 0.134 | 0.223 | 0.092 | 0.194 | 0.071 | 0.200 | 0.067 | 0.115 | undef | 0.048 | 0.153 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 64837-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.293E-08 | 1.447E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.262E-07 | 6.052E-04 |
|---|
| interphase | GO:0051325 | | 5.773E-07 | 4.426E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.951E-06 | 2.847E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.947E-06 | 2.736E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.947E-06 | 2.28E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.248E-05 | 4.1E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.248E-05 | 3.587E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.432E-05 | 3.659E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.504E-05 | 3.459E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.663E-05 | 3.477E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.788E-08 | 4.367E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.614E-07 | 1.971E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 1.478E-03 |
|---|
| female meiosis | GO:0007143 | | 2.42E-06 | 1.182E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 1.478E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 5.353E-06 | 1.868E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.595E-06 | 1.709E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 6.363E-06 | 1.727E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 6.363E-06 | 1.554E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 1.504E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.062E-08 | 4.962E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.642E-07 | 1.976E-04 |
|---|
| interphase | GO:0051325 | | 1.862E-07 | 1.493E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.841E-06 | 1.108E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 1.272E-03 |
|---|
| female meiosis | GO:0007143 | | 2.644E-06 | 1.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 9.086E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.036E-06 | 1.815E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.309E-06 | 1.687E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.174E-06 | 1.726E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.174E-06 | 1.569E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.788E-08 | 4.367E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.614E-07 | 1.971E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 1.478E-03 |
|---|
| female meiosis | GO:0007143 | | 2.42E-06 | 1.182E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 1.478E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 5.353E-06 | 1.868E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.595E-06 | 1.709E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 6.363E-06 | 1.727E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 6.363E-06 | 1.554E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 1.504E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.062E-08 | 4.962E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.642E-07 | 1.976E-04 |
|---|
| interphase | GO:0051325 | | 1.862E-07 | 1.493E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.841E-06 | 1.108E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 1.272E-03 |
|---|
| female meiosis | GO:0007143 | | 2.644E-06 | 1.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 9.086E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.036E-06 | 1.815E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.309E-06 | 1.687E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.174E-06 | 1.726E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.174E-06 | 1.569E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 5.213E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.099E-07 | 1.963E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 2.811E-03 |
|---|
| protein N-terminus binding | GO:0047485 | | 2.689E-06 | 2.4E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 2.367E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.957E-03 |
|---|
| nuclear origin of replication recognition complex | GO:0005664 | | 4.969E-06 | 2.535E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 2.877E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 2.759E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.483E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 9.269E-06 | 3.009E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.014E-08 | 3.698E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.696E-08 | 1.221E-04 |
|---|
| interphase | GO:0051325 | | 7.392E-08 | 8.989E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.34E-06 | 1.222E-03 |
|---|
| protein N-terminus binding | GO:0047485 | | 1.875E-06 | 1.368E-03 |
|---|
| origin recognition complex | GO:0000808 | | 2.566E-06 | 1.56E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 2.566E-06 | 1.337E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.566E-06 | 1.17E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.848E-06 | 1.56E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.848E-06 | 1.404E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.848E-06 | 1.276E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.062E-08 | 4.962E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.642E-07 | 1.976E-04 |
|---|
| interphase | GO:0051325 | | 1.862E-07 | 1.493E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.841E-06 | 1.108E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 1.272E-03 |
|---|
| female meiosis | GO:0007143 | | 2.644E-06 | 1.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 9.086E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.036E-06 | 1.815E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.309E-06 | 1.687E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.174E-06 | 1.726E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.174E-06 | 1.569E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.293E-08 | 1.447E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.262E-07 | 6.052E-04 |
|---|
| interphase | GO:0051325 | | 5.773E-07 | 4.426E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.951E-06 | 2.847E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.947E-06 | 2.736E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.947E-06 | 2.28E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.248E-05 | 4.1E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.248E-05 | 3.587E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.432E-05 | 3.659E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.504E-05 | 3.459E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.663E-05 | 3.477E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.293E-08 | 1.447E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.262E-07 | 6.052E-04 |
|---|
| interphase | GO:0051325 | | 5.773E-07 | 4.426E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.951E-06 | 2.847E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.947E-06 | 2.736E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.947E-06 | 2.28E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.248E-05 | 4.1E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.248E-05 | 3.587E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.432E-05 | 3.659E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.504E-05 | 3.459E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.663E-05 | 3.477E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell growth | GO:0030307 | | 6.331E-06 | 0.01166884 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.331E-06 | 5.834E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 6.331E-06 | 3.89E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.331E-06 | 2.917E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.861E-06 | 3.266E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.861E-06 | 2.722E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.181E-05 | 3.11E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.181E-05 | 2.721E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 1.518E-05 | 3.109E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.518E-05 | 2.798E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 1.518E-05 | 2.544E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.293E-08 | 1.447E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.262E-07 | 6.052E-04 |
|---|
| interphase | GO:0051325 | | 5.773E-07 | 4.426E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.951E-06 | 2.847E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.947E-06 | 2.736E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.947E-06 | 2.28E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.248E-05 | 4.1E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.248E-05 | 3.587E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.432E-05 | 3.659E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.504E-05 | 3.459E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.663E-05 | 3.477E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.002E-08 | 1.424E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.494E-07 | 5.332E-04 |
|---|
| interphase | GO:0051325 | | 4.925E-07 | 3.896E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.512E-06 | 2.677E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.303E-06 | 2.517E-03 |
|---|
| female meiosis | GO:0007143 | | 5.303E-06 | 2.097E-03 |
|---|
| oocyte maturation | GO:0001556 | | 5.303E-06 | 1.798E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.95E-06 | 2.358E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.113E-05 | 2.934E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.483E-05 | 3.519E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.483E-05 | 3.199E-03 |
|---|
