Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6208-7-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.16511.889e-021.539e-021.430e-01
IPC-NIBC-1290.27683.657e-025.334e-023.624e-01
Ivshina_GPL96-GPL970.21891.478e-022.377e-023.357e-01
Loi_GPL5700.23107.650e-028.603e-023.035e-01
Loi_GPL96-GPL970.15850.000e+006.000e-060.000e+00
Parker_GPL13900.22178.144e-029.880e-025.080e-01
Parker_GPL8870.04304.442e-014.633e-014.958e-01
Pawitan_GPL96-GPL970.37528.388e-018.030e-019.994e-01
Schmidt0.20871.701e-021.946e-022.093e-01
Sotiriou0.27382.290e-021.797e-022.973e-01
Van-De-Vijver0.27977.810e-041.124e-034.969e-02
Zhang0.28051.372e-019.052e-022.859e-01
Zhou0.43415.783e-024.574e-023.526e-01

Expression data for subnetwork 6208-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6208-7-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI53529220.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.2010.2710.372
rps6kb1RPS6KB1 on ITI RPS6KB1 on NCBI540216200-0.0480.0040.0330.1440.1280.095-0.3190.0220.1160.0840.0680.0760.280
eif4ebp1EIF4EBP1 on ITI EIF4EBP1 on NCBI4502602390.1580.2030.1320.1390.1040.1220.1190.2520.0310.0420.1880.0290.219
tle1TLE1 on ITI TLE1 on NCBI476130.0620.235-0.032-0.1770.0330.0850.3390.0680.126-0.0270.1700.0680.025
ccnb1CCNB1 on ITI CCNB1 on NCBI42856390.0820.2460.2120.2240.2560.0990.1260.3510.1290.249undef0.1670.398
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
stmn1STMN1 on ITI STMN1 on NCBI4501731570.0470.3040.1490.0910.1310.2000.0700.2750.2320.1300.1940.1300.348
tsc1TSC1 on ITI TSC1 on NCBI58418130.0490.012-0.0550.0720.055-0.144-0.242-0.1960.0060.0100.095-0.0070.207
rps14RPS14 on ITI RPS14 on NCBI1116260262-0.0120.046-0.0340.1860.076-0.036-0.2700.076-0.0800.155undef0.0940.128
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
eif4eEIF4E on ITI EIF4E on NCBI362260243-0.0220.1070.0730.1650.0950.122-0.0910.0120.1520.1130.0580.1070.083
sfnSFN on ITI SFN on NCBI613120.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.1580.0790.181

GO Enrichment output for subnetwork 6208-7-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO1.048E-072.41E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.706E-074.262E-04
negative regulation of translationGO:0017148GO:0017148 on GO8.282E-076.349E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.065E-061.762E-03
interphaseGO:0051325GO:0051325 on GO3.36E-061.546E-03
translational initiationGO:0006413GO:0006413 on GO3.816E-061.463E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.371E-054.506E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.371E-053.943E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.787E-054.568E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.056E-054.728E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.876E-056.013E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.182E-072.888E-04
negative regulation of translationGO:0017148GO:0017148 on GO4.946E-076.041E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.057E-068.609E-04
translational initiationGO:0006413GO:0006413 on GO1.578E-069.636E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO5.975E-062.92E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.496E-062.645E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO8.959E-063.127E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.671E-055.102E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.671E-054.535E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.671E-054.081E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO2.12E-054.708E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.958E-074.712E-04
negative regulation of translationGO:0017148GO:0017148 on GO7.251E-078.723E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.542E-061.237E-03
interphaseGO:0051325GO:0051325 on GO1.746E-061.05E-03
translational initiationGO:0006413GO:0006413 on GO2.312E-061.112E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.727E-063.098E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO7.727E-062.656E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO9.506E-062.859E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.16E-055.774E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.16E-055.197E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO2.16E-054.724E-03


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.182E-072.888E-04
negative regulation of translationGO:0017148GO:0017148 on GO4.946E-076.041E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.057E-068.609E-04
translational initiationGO:0006413GO:0006413 on GO1.578E-069.636E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO5.975E-062.92E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.496E-062.645E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO8.959E-063.127E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.671E-055.102E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.671E-054.535E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.671E-054.081E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO2.12E-054.708E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.958E-074.712E-04
negative regulation of translationGO:0017148GO:0017148 on GO7.251E-078.723E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.542E-061.237E-03
interphaseGO:0051325GO:0051325 on GO1.746E-061.05E-03
translational initiationGO:0006413GO:0006413 on GO2.312E-061.112E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.727E-063.098E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO7.727E-062.656E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO9.506E-062.859E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.16E-055.774E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.16E-055.197E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO2.16E-054.724E-03


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.805E-081.359E-04
negative regulation of translationGO:0017148GO:0017148 on GO2.511E-074.483E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.854E-073.398E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.618E-064.122E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO5.061E-063.615E-03
eukaryotic initiation factor 4E bindingGO:0008190GO:0008190 on GO5.061E-063.012E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO7.589E-063.871E-03
regulation of phosphoprotein phosphatase activityGO:0043666GO:0043666 on GO1.062E-054.74E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.062E-054.214E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.062E-053.792E-03
translation initiation factor bindingGO:0031369GO:0031369 on GO1.062E-053.448E-03


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.38E-088.681E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.568E-072.86E-04
negative regulation of translationGO:0017148GO:0017148 on GO1.633E-071.986E-04
interphaseGO:0051325GO:0051325 on GO1.731E-071.578E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.448E-061.786E-03
response to insulin stimulusGO:0032868GO:0032868 on GO3.212E-061.953E-03
positive regulation of cell-matrix adhesionGO:0001954GO:0001954 on GO3.763E-061.961E-03
RNA polymerase II carboxy-terminal domain kinase activityGO:0008353GO:0008353 on GO3.763E-061.716E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO5.642E-062.287E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO5.642E-062.058E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO5.642E-061.871E-03


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.958E-074.712E-04
negative regulation of translationGO:0017148GO:0017148 on GO7.251E-078.723E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.542E-061.237E-03
interphaseGO:0051325GO:0051325 on GO1.746E-061.05E-03
translational initiationGO:0006413GO:0006413 on GO2.312E-061.112E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.727E-063.098E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO7.727E-062.656E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO9.506E-062.859E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.16E-055.774E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.16E-055.197E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO2.16E-054.724E-03


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO1.048E-072.41E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.706E-074.262E-04
negative regulation of translationGO:0017148GO:0017148 on GO8.282E-076.349E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.065E-061.762E-03
interphaseGO:0051325GO:0051325 on GO3.36E-061.546E-03
translational initiationGO:0006413GO:0006413 on GO3.816E-061.463E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.371E-054.506E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.371E-053.943E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.787E-054.568E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.056E-054.728E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.876E-056.013E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO1.048E-072.41E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.706E-074.262E-04
negative regulation of translationGO:0017148GO:0017148 on GO8.282E-076.349E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.065E-061.762E-03
interphaseGO:0051325GO:0051325 on GO3.36E-061.546E-03
translational initiationGO:0006413GO:0006413 on GO3.816E-061.463E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.371E-054.506E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.371E-053.943E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.787E-054.568E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.056E-054.728E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.876E-056.013E-03


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
negative regulation of translationGO:0017148GO:0017148 on GO2.26E-074.165E-04
regulation of translationGO:0006417GO:0006417 on GO6.294E-075.8E-04
posttranscriptional regulation of gene expressionGO:0010608GO:0010608 on GO2.594E-061.594E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO1.771E-058.159E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.771E-056.527E-03
regulation of Rho GTPase activityGO:0032319GO:0032319 on GO1.771E-055.439E-03
positive regulation of Ras GTPase activityGO:0032320GO:0032320 on GO1.771E-054.662E-03
positive regulation of GTPase activityGO:0043547GO:0043547 on GO2.478E-055.708E-03
cellular protein complex disassemblyGO:0043624GO:0043624 on GO2.478E-055.074E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO2.478E-054.566E-03
regulation of stress fiber formationGO:0051492GO:0051492 on GO3.302E-055.532E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO1.048E-072.41E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.706E-074.262E-04
negative regulation of translationGO:0017148GO:0017148 on GO8.282E-076.349E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.065E-061.762E-03
interphaseGO:0051325GO:0051325 on GO3.36E-061.546E-03
translational initiationGO:0006413GO:0006413 on GO3.816E-061.463E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.371E-054.506E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.371E-053.943E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.787E-054.568E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.056E-054.728E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.876E-056.013E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
ribosomal subunit assemblyGO:0042257GO:0042257 on GO9.698E-122.301E-08
ribosome assemblyGO:0042255GO:0042255 on GO2.625E-093.115E-06
ribosomal small subunit biogenesisGO:0042274GO:0042274 on GO5.87E-094.643E-06
erythrocyte differentiationGO:0030218GO:0030218 on GO7.751E-084.598E-05
erythrocyte homeostasisGO:0034101GO:0034101 on GO1.721E-078.167E-05
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.454E-072.157E-04
ribonucleoprotein complex assemblyGO:0022618GO:0022618 on GO5.885E-071.995E-04
myeloid cell differentiationGO:0030099GO:0030099 on GO1.172E-063.478E-04
homeostasis of number of cellsGO:0048872GO:0048872 on GO1.886E-064.971E-04
negative regulation of translationGO:0017148GO:0017148 on GO1.972E-064.68E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO4.028E-068.69E-04


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