Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6197-7-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.19948.898e-036.560e-037.942e-02
IPC-NIBC-1290.25379.360e-021.305e-016.327e-01
Ivshina_GPL96-GPL970.25552.134e-023.322e-024.036e-01
Loi_GPL5700.24216.549e-027.396e-022.697e-01
Loi_GPL96-GPL970.16442.000e-062.400e-055.000e-06
Parker_GPL13900.20471.028e-011.232e-015.679e-01
Parker_GPL8870.13333.609e-013.797e-013.936e-01
Pawitan_GPL96-GPL970.35103.997e-013.259e-019.308e-01
Schmidt0.19212.303e-022.690e-022.571e-01
Sotiriou0.31641.131e-028.680e-032.020e-01
Van-De-Vijver0.21066.310e-049.080e-044.296e-02
Zhang0.26211.257e-018.105e-022.659e-01
Zhou0.44607.216e-026.103e-024.157e-01

Expression data for subnetwork 6197-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6197-7-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI53529220.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.2010.2710.372
stmn2STMN2 on ITI STMN2 on NCBI29934270.0570.1060.0050.0520.1100.071-0.0990.0060.0340.1030.0080.113-0.039
cep55CEP55 on ITI CEP55 on NCBI6352071870.0540.2100.1480.1290.1350.1620.1330.2090.2020.1380.1890.1150.330
krt18KRT18 on ITI KRT18 on NCBI6351841660.112-0.0780.1470.1500.161-0.086-0.2040.083-0.0990.118-0.024-0.1140.222
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
pcntPCNT on ITI PCNT on NCBI450207197-0.0130.2580.082-0.1280.0860.1110.0330.1540.0870.0420.0860.2520.255
tsc1TSC1 on ITI TSC1 on NCBI58418130.0490.012-0.0550.0720.055-0.144-0.242-0.1960.0060.0100.095-0.0070.207
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
sfnSFN on ITI SFN on NCBI613120.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.1580.0790.181
rps6ka3RPS6KA3 on ITI RPS6KA3 on NCBI4502071970.0220.2230.0860.0780.0770.113-0.2120.1550.142-0.004-0.0840.057-0.071

GO Enrichment output for subnetwork 6197-7-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.139E-072.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO2.876E-073.307E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO3.259E-072.498E-04
regulation of cytoskeleton organizationGO:0051493GO:0051493 on GO1.301E-067.479E-04
regulation of cellular component biogenesisGO:0044087GO:0044087 on GO1.477E-066.796E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO6.087E-062.333E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO7.591E-062.494E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.254E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.004E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO9.952E-062.289E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO1.061E-052.218E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.142E-081.256E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.657E-072.024E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO1.938E-071.578E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO3.528E-062.155E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO3.528E-061.724E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.001E-061.629E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO5.998E-062.093E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO6.074E-061.855E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO6.074E-061.649E-03
regulation of actin filament lengthGO:0030832GO:0030832 on GO7.135E-061.743E-03
regulation of cellular component sizeGO:0032535GO:0032535 on GO8.311E-061.846E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO6.735E-081.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.947E-072.342E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO2.287E-071.834E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO4.068E-062.447E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.35E-062.093E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.625E-061.855E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO4.625E-061.59E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO6.692E-062.013E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO6.692E-061.789E-03
regulation of actin filament lengthGO:0030832GO:0030832 on GO7.908E-061.903E-03
regulation of cellular component sizeGO:0032535GO:0032535 on GO9.262E-062.026E-03


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.142E-081.256E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.657E-072.024E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO1.938E-071.578E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO3.528E-062.155E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO3.528E-061.724E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.001E-061.629E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO5.998E-062.093E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO6.074E-061.855E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO6.074E-061.649E-03
regulation of actin filament lengthGO:0030832GO:0030832 on GO7.135E-061.743E-03
regulation of cellular component sizeGO:0032535GO:0032535 on GO8.311E-061.846E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO6.735E-081.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.947E-072.342E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO2.287E-071.834E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO4.068E-062.447E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.35E-062.093E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.625E-061.855E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO4.625E-061.59E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO6.692E-062.013E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO6.692E-061.789E-03
regulation of actin filament lengthGO:0030832GO:0030832 on GO7.908E-061.903E-03
regulation of cellular component sizeGO:0032535GO:0032535 on GO9.262E-062.026E-03


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.46E-085.213E-05
microtubule organizing center partGO:0044450GO:0044450 on GO7.024E-071.254E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.361E-062.811E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.314E-062.958E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO4.969E-063.549E-03
tumor necrosis factor-mediated signaling pathwayGO:0033209GO:0033209 on GO4.969E-062.957E-03
protein kinase regulator activityGO:0019887GO:0019887 on GO6.445E-063.288E-03
regulation of phosphoprotein phosphatase activityGO:0043666GO:0043666 on GO6.954E-063.104E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO6.954E-062.759E-03
centriolar satelliteGO:0034451GO:0034451 on GO6.954E-062.483E-03
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO9.269E-063.009E-03


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.59E-085.799E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.839E-063.354E-03
Golgi to plasma membrane transportGO:0006893GO:0006893 on GO3.136E-063.813E-03
positive regulation of cell-matrix adhesionGO:0001954GO:0001954 on GO3.136E-062.86E-03
RNA polymerase II carboxy-terminal domain kinase activityGO:0008353GO:0008353 on GO3.136E-062.288E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO4.703E-062.859E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO4.703E-062.451E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.703E-062.144E-03
centriolar satelliteGO:0034451GO:0034451 on GO6.582E-062.668E-03
protein kinase regulator activityGO:0019887GO:0019887 on GO6.769E-062.469E-03
tumor necrosis factor-mediated signaling pathwayGO:0033209GO:0033209 on GO8.773E-062.909E-03


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO6.735E-081.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.947E-072.342E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO2.287E-071.834E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO4.068E-062.447E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.35E-062.093E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.625E-061.855E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO4.625E-061.59E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO6.692E-062.013E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO6.692E-061.789E-03
regulation of actin filament lengthGO:0030832GO:0030832 on GO7.908E-061.903E-03
regulation of cellular component sizeGO:0032535GO:0032535 on GO9.262E-062.026E-03


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.139E-072.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO2.876E-073.307E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO3.259E-072.498E-04
regulation of cytoskeleton organizationGO:0051493GO:0051493 on GO1.301E-067.479E-04
regulation of cellular component biogenesisGO:0044087GO:0044087 on GO1.477E-066.796E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO6.087E-062.333E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO7.591E-062.494E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.254E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.004E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO9.952E-062.289E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO1.061E-052.218E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.139E-072.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO2.876E-073.307E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO3.259E-072.498E-04
regulation of cytoskeleton organizationGO:0051493GO:0051493 on GO1.301E-067.479E-04
regulation of cellular component biogenesisGO:0044087GO:0044087 on GO1.477E-066.796E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO6.087E-062.333E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO7.591E-062.494E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.254E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.004E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO9.952E-062.289E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO1.061E-052.218E-03


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO1.431E-050.02638188
regulation of actin filament-based processGO:0032970GO:0032970 on GO1.53E-050.01410351
positive regulation of cell growthGO:0030307GO:0030307 on GO1.771E-050.01087825
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.771E-058.159E-03
regulation of Rho GTPase activityGO:0032319GO:0032319 on GO1.771E-056.527E-03
positive regulation of Ras GTPase activityGO:0032320GO:0032320 on GO1.771E-055.439E-03
positive regulation of GTPase activityGO:0043547GO:0043547 on GO2.478E-056.523E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO2.478E-055.708E-03
regulation of stress fiber formationGO:0051492GO:0051492 on GO3.302E-056.761E-03
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO3.302E-056.085E-03
regulation of cellular component biogenesisGO:0044087GO:0044087 on GO3.78E-056.333E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.139E-072.62E-04
regulation of actin cytoskeleton organizationGO:0032956GO:0032956 on GO2.876E-073.307E-04
regulation of actin filament-based processGO:0032970GO:0032970 on GO3.259E-072.498E-04
regulation of cytoskeleton organizationGO:0051493GO:0051493 on GO1.301E-067.479E-04
regulation of cellular component biogenesisGO:0044087GO:0044087 on GO1.477E-066.796E-04
regulation of actin filament polymerizationGO:0030833GO:0030833 on GO6.087E-062.333E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO7.591E-062.494E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.254E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.004E-03
regulation of protein polymerizationGO:0032271GO:0032271 on GO9.952E-062.289E-03
regulation of actin polymerization or depolymerizationGO:0008064GO:0008064 on GO1.061E-052.218E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.987E-081.895E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.545E-066.579E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO6.06E-064.793E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO9.085E-065.39E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.271E-056.034E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.694E-056.701E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.694E-055.744E-03
regulation of phosphoprotein phosphatase activityGO:0043666GO:0043666 on GO2.72E-058.069E-03
regulation of stress fiber formationGO:0051492GO:0051492 on GO2.72E-057.173E-03
positive regulation of Ras GTPase activityGO:0032320GO:0032320 on GO2.72E-056.456E-03
regulation of phosphatase activityGO:0010921GO:0010921 on GO3.323E-057.169E-03


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