Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6197-7-real
score
Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
Desmedt | 0.1994 | 8.898e-03 | 6.560e-03 | 7.942e-02 |
IPC-NIBC-129 | 0.2537 | 9.360e-02 | 1.305e-01 | 6.327e-01 |
Ivshina_GPL96-GPL97 | 0.2555 | 2.134e-02 | 3.322e-02 | 4.036e-01 |
Loi_GPL570 | 0.2421 | 6.549e-02 | 7.396e-02 | 2.697e-01 |
Loi_GPL96-GPL97 | 0.1644 | 2.000e-06 | 2.400e-05 | 5.000e-06 |
Parker_GPL1390 | 0.2047 | 1.028e-01 | 1.232e-01 | 5.679e-01 |
Parker_GPL887 | 0.1333 | 3.609e-01 | 3.797e-01 | 3.936e-01 |
Pawitan_GPL96-GPL97 | 0.3510 | 3.997e-01 | 3.259e-01 | 9.308e-01 |
Schmidt | 0.1921 | 2.303e-02 | 2.690e-02 | 2.571e-01 |
Sotiriou | 0.3164 | 1.131e-02 | 8.680e-03 | 2.020e-01 |
Van-De-Vijver | 0.2106 | 6.310e-04 | 9.080e-04 | 4.296e-02 |
Zhang | 0.2621 | 1.257e-01 | 8.105e-02 | 2.659e-01 |
Zhou | 0.4460 | 7.216e-02 | 6.103e-02 | 4.157e-01 |
Expression data for subnetwork 6197-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt

Score for each gene in subnetwork 6197-7-real in each dataset
Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
cdkn3 |  | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
stmn2 |  | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
cep55 |  | 6 | 35 | 207 | 187 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.189 | 0.115 | 0.330 |
krt18 |  | 6 | 35 | 184 | 166 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | -0.024 | -0.114 | 0.222 |
ccnd1 |  | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
pcnt |  | 4 | 50 | 207 | 197 | -0.013 | 0.258 | 0.082 | -0.128 | 0.086 | 0.111 | 0.033 | 0.154 | 0.087 | 0.042 | 0.086 | 0.252 | 0.255 |
tsc1 |  | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
cdc2 |  | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
sfn |  | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
rps6ka3 |  | 4 | 50 | 207 | 197 | 0.022 | 0.223 | 0.086 | 0.078 | 0.077 | 0.113 | -0.212 | 0.155 | 0.142 | -0.004 | -0.084 | 0.057 | -0.071 |
GO Enrichment output for subnetwork 6197-7-real in each dataset
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.139E-07 | 2.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 2.876E-07 | 3.307E-04 |
regulation of actin filament-based process | GO:0032970 |  | 3.259E-07 | 2.498E-04 |
regulation of cytoskeleton organization | GO:0051493 |  | 1.301E-06 | 7.479E-04 |
regulation of cellular component biogenesis | GO:0044087 |  | 1.477E-06 | 6.796E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 6.087E-06 | 2.333E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 7.591E-06 | 2.494E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.254E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.004E-03 |
regulation of protein polymerization | GO:0032271 |  | 9.952E-06 | 2.289E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 1.061E-05 | 2.218E-03 |
IPC-NIBC-129 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.142E-08 | 1.256E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.657E-07 | 2.024E-04 |
regulation of actin filament-based process | GO:0032970 |  | 1.938E-07 | 1.578E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 3.528E-06 | 2.155E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 3.528E-06 | 1.724E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.001E-06 | 1.629E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 5.998E-06 | 2.093E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 6.074E-06 | 1.855E-03 |
regulation of protein polymerization | GO:0032271 |  | 6.074E-06 | 1.649E-03 |
regulation of actin filament length | GO:0030832 |  | 7.135E-06 | 1.743E-03 |
regulation of cellular component size | GO:0032535 |  | 8.311E-06 | 1.846E-03 |
Ivshina_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.735E-08 | 1.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.947E-07 | 2.342E-04 |
regulation of actin filament-based process | GO:0032970 |  | 2.287E-07 | 1.834E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 4.068E-06 | 2.447E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 4.35E-06 | 2.093E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.625E-06 | 1.855E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 4.625E-06 | 1.59E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 6.692E-06 | 2.013E-03 |
regulation of protein polymerization | GO:0032271 |  | 6.692E-06 | 1.789E-03 |
regulation of actin filament length | GO:0030832 |  | 7.908E-06 | 1.903E-03 |
regulation of cellular component size | GO:0032535 |  | 9.262E-06 | 2.026E-03 |
Loi_GPL570 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.142E-08 | 1.256E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.657E-07 | 2.024E-04 |
regulation of actin filament-based process | GO:0032970 |  | 1.938E-07 | 1.578E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 3.528E-06 | 2.155E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 3.528E-06 | 1.724E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.001E-06 | 1.629E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 5.998E-06 | 2.093E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 6.074E-06 | 1.855E-03 |
regulation of protein polymerization | GO:0032271 |  | 6.074E-06 | 1.649E-03 |
regulation of actin filament length | GO:0030832 |  | 7.135E-06 | 1.743E-03 |
regulation of cellular component size | GO:0032535 |  | 8.311E-06 | 1.846E-03 |
Loi_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.735E-08 | 1.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.947E-07 | 2.342E-04 |
regulation of actin filament-based process | GO:0032970 |  | 2.287E-07 | 1.834E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 4.068E-06 | 2.447E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 4.35E-06 | 2.093E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.625E-06 | 1.855E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 4.625E-06 | 1.59E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 6.692E-06 | 2.013E-03 |
regulation of protein polymerization | GO:0032271 |  | 6.692E-06 | 1.789E-03 |
regulation of actin filament length | GO:0030832 |  | 7.908E-06 | 1.903E-03 |
regulation of cellular component size | GO:0032535 |  | 9.262E-06 | 2.026E-03 |
Parker_GPL1390 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.46E-08 | 5.213E-05 |
microtubule organizing center part | GO:0044450 |  | 7.024E-07 | 1.254E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 2.361E-06 | 2.811E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.314E-06 | 2.958E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 4.969E-06 | 3.549E-03 |
tumor necrosis factor-mediated signaling pathway | GO:0033209 |  | 4.969E-06 | 2.957E-03 |
protein kinase regulator activity | GO:0019887 |  | 6.445E-06 | 3.288E-03 |
regulation of phosphoprotein phosphatase activity | GO:0043666 |  | 6.954E-06 | 3.104E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 6.954E-06 | 2.759E-03 |
centriolar satellite | GO:0034451 |  | 6.954E-06 | 2.483E-03 |
cyclin-dependent protein kinase holoenzyme complex | GO:0000307 |  | 9.269E-06 | 3.009E-03 |
Parker_GPL887 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.59E-08 | 5.799E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.839E-06 | 3.354E-03 |
Golgi to plasma membrane transport | GO:0006893 |  | 3.136E-06 | 3.813E-03 |
positive regulation of cell-matrix adhesion | GO:0001954 |  | 3.136E-06 | 2.86E-03 |
RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 |  | 3.136E-06 | 2.288E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 4.703E-06 | 2.859E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 4.703E-06 | 2.451E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.703E-06 | 2.144E-03 |
centriolar satellite | GO:0034451 |  | 6.582E-06 | 2.668E-03 |
protein kinase regulator activity | GO:0019887 |  | 6.769E-06 | 2.469E-03 |
tumor necrosis factor-mediated signaling pathway | GO:0033209 |  | 8.773E-06 | 2.909E-03 |
Pawitan_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.735E-08 | 1.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.947E-07 | 2.342E-04 |
regulation of actin filament-based process | GO:0032970 |  | 2.287E-07 | 1.834E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 4.068E-06 | 2.447E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 4.35E-06 | 2.093E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.625E-06 | 1.855E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 4.625E-06 | 1.59E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 6.692E-06 | 2.013E-03 |
regulation of protein polymerization | GO:0032271 |  | 6.692E-06 | 1.789E-03 |
regulation of actin filament length | GO:0030832 |  | 7.908E-06 | 1.903E-03 |
regulation of cellular component size | GO:0032535 |  | 9.262E-06 | 2.026E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.139E-07 | 2.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 2.876E-07 | 3.307E-04 |
regulation of actin filament-based process | GO:0032970 |  | 3.259E-07 | 2.498E-04 |
regulation of cytoskeleton organization | GO:0051493 |  | 1.301E-06 | 7.479E-04 |
regulation of cellular component biogenesis | GO:0044087 |  | 1.477E-06 | 6.796E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 6.087E-06 | 2.333E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 7.591E-06 | 2.494E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.254E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.004E-03 |
regulation of protein polymerization | GO:0032271 |  | 9.952E-06 | 2.289E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 1.061E-05 | 2.218E-03 |
Sotiriou file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.139E-07 | 2.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 2.876E-07 | 3.307E-04 |
regulation of actin filament-based process | GO:0032970 |  | 3.259E-07 | 2.498E-04 |
regulation of cytoskeleton organization | GO:0051493 |  | 1.301E-06 | 7.479E-04 |
regulation of cellular component biogenesis | GO:0044087 |  | 1.477E-06 | 6.796E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 6.087E-06 | 2.333E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 7.591E-06 | 2.494E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.254E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.004E-03 |
regulation of protein polymerization | GO:0032271 |  | 9.952E-06 | 2.289E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 1.061E-05 | 2.218E-03 |
Van-De-Vijver file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of actin cytoskeleton organization | GO:0032956 |  | 1.431E-05 | 0.02638188 |
regulation of actin filament-based process | GO:0032970 |  | 1.53E-05 | 0.01410351 |
positive regulation of cell growth | GO:0030307 |  | 1.771E-05 | 0.01087825 |
regulation of focal adhesion formation | GO:0051893 |  | 1.771E-05 | 8.159E-03 |
regulation of Rho GTPase activity | GO:0032319 |  | 1.771E-05 | 6.527E-03 |
positive regulation of Ras GTPase activity | GO:0032320 |  | 1.771E-05 | 5.439E-03 |
positive regulation of GTPase activity | GO:0043547 |  | 2.478E-05 | 6.523E-03 |
keratinocyte proliferation | GO:0043616 |  | 2.478E-05 | 5.708E-03 |
regulation of stress fiber formation | GO:0051492 |  | 3.302E-05 | 6.761E-03 |
release of cytochrome c from mitochondria | GO:0001836 |  | 3.302E-05 | 6.085E-03 |
regulation of cellular component biogenesis | GO:0044087 |  | 3.78E-05 | 6.333E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.139E-07 | 2.62E-04 |
regulation of actin cytoskeleton organization | GO:0032956 |  | 2.876E-07 | 3.307E-04 |
regulation of actin filament-based process | GO:0032970 |  | 3.259E-07 | 2.498E-04 |
regulation of cytoskeleton organization | GO:0051493 |  | 1.301E-06 | 7.479E-04 |
regulation of cellular component biogenesis | GO:0044087 |  | 1.477E-06 | 6.796E-04 |
regulation of actin filament polymerization | GO:0030833 |  | 6.087E-06 | 2.333E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 7.591E-06 | 2.494E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.254E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.004E-03 |
regulation of protein polymerization | GO:0032271 |  | 9.952E-06 | 2.289E-03 |
regulation of actin polymerization or depolymerization | GO:0008064 |  | 1.061E-05 | 2.218E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.987E-08 | 1.895E-04 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.545E-06 | 6.579E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 6.06E-06 | 4.793E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 9.085E-06 | 5.39E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.271E-05 | 6.034E-03 |
keratinocyte proliferation | GO:0043616 |  | 1.694E-05 | 6.701E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.694E-05 | 5.744E-03 |
regulation of phosphoprotein phosphatase activity | GO:0043666 |  | 2.72E-05 | 8.069E-03 |
regulation of stress fiber formation | GO:0051492 |  | 2.72E-05 | 7.173E-03 |
positive regulation of Ras GTPase activity | GO:0032320 |  | 2.72E-05 | 6.456E-03 |
regulation of phosphatase activity | GO:0010921 |  | 3.323E-05 | 7.169E-03 |