Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6014-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2529 | 1.111e-02 | 8.439e-03 | 9.477e-02 |
|---|
| IPC-NIBC-129 | 0.2457 | 6.005e-02 | 8.569e-02 | 4.975e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2448 | 3.420e-03 | 6.236e-03 | 1.453e-01 |
|---|
| Loi_GPL570 | 0.3433 | 1.521e-02 | 1.783e-02 | 7.986e-02 |
|---|
| Loi_GPL96-GPL97 | 0.1520 | 4.000e-06 | 3.900e-05 | 1.300e-05 |
|---|
| Parker_GPL1390 | 0.2890 | 3.999e-02 | 5.020e-02 | 3.478e-01 |
|---|
| Parker_GPL887 | 0.2055 | 2.587e-01 | 2.758e-01 | 2.676e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3574 | 1.942e-01 | 1.372e-01 | 7.434e-01 |
|---|
| Schmidt | 0.2585 | 1.400e-02 | 1.580e-02 | 1.827e-01 |
|---|
| Sotiriou | 0.3407 | 7.532e-03 | 5.714e-03 | 1.599e-01 |
|---|
| Van-De-Vijver | 0.2435 | 1.393e-03 | 2.004e-03 | 7.313e-02 |
|---|
| Zhang | 0.2923 | 1.515e-01 | 1.025e-01 | 3.099e-01 |
|---|
| Zhou | 0.4018 | 6.809e-02 | 5.660e-02 | 3.985e-01 |
|---|
Expression data for subnetwork 6014-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6014-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| nfatc4 | | 15 | 11 | 1 | 5 | 0.094 | -0.056 | -0.021 | 0.204 | 0.079 | -0.008 | 0.243 | 0.060 | 0.077 | -0.012 | 0.136 | 0.131 | 0.154 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| rit2 | | 1 | 116 | 54 | 65 | 0.029 | 0.105 | -0.082 | 0.155 | 0.054 | -0.096 | 0.147 | -0.002 | 0.102 | -0.087 | undef | 0.131 | -0.178 |
|---|
| ywhaz | | 17 | 10 | 29 | 25 | 0.124 | 0.089 | 0.087 | 0.200 | 0.141 | 0.110 | 0.228 | 0.199 | 0.056 | 0.123 | undef | 0.103 | 0.213 |
|---|
| cfl1 | | 8 | 26 | 18 | 16 | 0.216 | 0.134 | 0.083 | -0.084 | 0.142 | 0.251 | -0.466 | 0.229 | 0.174 | 0.188 | 0.208 | -0.025 | 0.215 |
|---|
| prkci | | 14 | 15 | 31 | 26 | 0.065 | 0.104 | 0.012 | 0.170 | 0.112 | 0.088 | -0.103 | -0.170 | 0.196 | 0.128 | 0.049 | 0.124 | 0.149 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| hras | | 14 | 15 | 42 | 34 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.195 | 0.022 | 0.245 | 0.086 | 0.208 | 0.180 | 0.003 | 0.197 |
|---|
| hsph1 | | 8 | 26 | 18 | 16 | 0.071 | 0.260 | 0.138 | 0.050 | 0.148 | 0.197 | -0.116 | 0.161 | 0.143 | 0.132 | -0.006 | 0.094 | 0.357 |
|---|
| tesk1 | | 7 | 30 | 18 | 19 | 0.110 | 0.169 | 0.161 | 0.179 | 0.096 | 0.138 | -0.154 | 0.245 | 0.155 | 0.092 | 0.067 | 0.029 | 0.200 |
|---|
| map2k1 | | 10 | 20 | 54 | 44 | 0.154 | 0.096 | 0.093 | 0.013 | 0.095 | 0.045 | -0.223 | 0.207 | 0.082 | 0.096 | undef | undef | 0.230 |
|---|
GO Enrichment output for subnetwork 6014-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 |  | 2.915E-08 | 6.703E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 2.439E-07 | 2.804E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.781E-07 | 3.665E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.615E-06 | 9.283E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.274E-06 | 1.506E-03 |
|---|
| sperm motility | GO:0030317 | | 5.789E-06 | 2.219E-03 |
|---|
| hexose biosynthetic process | GO:0019319 | | 1.04E-05 | 3.417E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.368E-05 | 3.933E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 1.408E-05 | 3.597E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 1.695E-05 | 3.898E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 1.695E-05 | 3.544E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| establishment of cell polarity | GO:0030010 | | 2.331E-10 | 5.695E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 5.999E-09 | 7.328E-06 |
|---|
| neural plate morphogenesis | GO:0001839 | | 5.999E-09 | 4.885E-06 |
|---|
| neural plate development | GO:0001840 | | 1.199E-08 | 7.324E-06 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 4.686E-08 | 2.289E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.708E-07 | 6.953E-05 |
|---|
| fructose metabolic process | GO:0006000 | | 3.338E-07 | 1.165E-04 |
|---|
| actin filament organization | GO:0007015 | | 4.671E-07 | 1.426E-04 |
|---|
| neural crest cell migration | GO:0001755 | | 4.858E-07 | 1.319E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 5.811E-07 | 1.42E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.793E-07 | 1.509E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 7.187E-09 | 1.729E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 8.598E-08 | 1.034E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.045E-07 | 1.64E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 3.997E-07 | 2.404E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.438E-06 | 6.918E-04 |
|---|
| sperm motility | GO:0030317 | | 1.633E-06 | 6.547E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 3.505E-06 | 1.205E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 5.034E-06 | 1.514E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 5.474E-06 | 1.463E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 7.492E-06 | 1.803E-03 |
|---|
| alcohol biosynthetic process | GO:0046165 | | 8.063E-06 | 1.764E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| establishment of cell polarity | GO:0030010 | | 2.331E-10 | 5.695E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 5.999E-09 | 7.328E-06 |
|---|
| neural plate morphogenesis | GO:0001839 | | 5.999E-09 | 4.885E-06 |
|---|
| neural plate development | GO:0001840 | | 1.199E-08 | 7.324E-06 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 4.686E-08 | 2.289E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.708E-07 | 6.953E-05 |
|---|
| fructose metabolic process | GO:0006000 | | 3.338E-07 | 1.165E-04 |
|---|
| actin filament organization | GO:0007015 | | 4.671E-07 | 1.426E-04 |
|---|
| neural crest cell migration | GO:0001755 | | 4.858E-07 | 1.319E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 5.811E-07 | 1.42E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.793E-07 | 1.509E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 7.187E-09 | 1.729E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 8.598E-08 | 1.034E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.045E-07 | 1.64E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 3.997E-07 | 2.404E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.438E-06 | 6.918E-04 |
|---|
| sperm motility | GO:0030317 | | 1.633E-06 | 6.547E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 3.505E-06 | 1.205E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 5.034E-06 | 1.514E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 5.474E-06 | 1.463E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 7.492E-06 | 1.803E-03 |
|---|
| alcohol biosynthetic process | GO:0046165 | | 8.063E-06 | 1.764E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| establishment of cell polarity | GO:0030010 | | 1.02E-07 | 3.643E-04 |
|---|
| cell cortex | GO:0005938 | | 6.129E-07 | 1.094E-03 |
|---|
| site of polarized growth | GO:0030427 | | 1.299E-06 | 1.547E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 2.473E-06 | 2.208E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 4.573E-06 | 3.266E-03 |
|---|
| neural plate development | GO:0001840 | | 9.657E-06 | 5.748E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.657E-06 | 4.926E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.262E-05 | 5.634E-03 |
|---|
| cell cortex part | GO:0044448 | | 1.347E-05 | 5.347E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.448E-05 | 5.17E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.448E-05 | 4.7E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| establishment of cell polarity | GO:0030010 | | 5.208E-08 | 1.9E-04 |
|---|
| cell cortex | GO:0005938 | | 4.112E-07 | 7.501E-04 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.293E-06 | 1.572E-03 |
|---|
| site of polarized growth | GO:0030427 | | 1.413E-06 | 1.289E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 2.24E-06 | 1.634E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.506E-06 | 4.564E-03 |
|---|
| neural plate morphogenesis | GO:0001839 | | 7.75E-06 | 4.039E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 7.75E-06 | 3.534E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 7.75E-06 | 3.141E-03 |
|---|
| cell cortex part | GO:0044448 | | 1.049E-05 | 3.827E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.162E-05 | 3.853E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 7.187E-09 | 1.729E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 8.598E-08 | 1.034E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.045E-07 | 1.64E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 3.997E-07 | 2.404E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.438E-06 | 6.918E-04 |
|---|
| sperm motility | GO:0030317 | | 1.633E-06 | 6.547E-04 |
|---|
| hexose biosynthetic process | GO:0019319 | | 3.505E-06 | 1.205E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 5.034E-06 | 1.514E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 5.474E-06 | 1.463E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 7.492E-06 | 1.803E-03 |
|---|
| alcohol biosynthetic process | GO:0046165 | | 8.063E-06 | 1.764E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 2.915E-08 | 6.703E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 2.439E-07 | 2.804E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.781E-07 | 3.665E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.615E-06 | 9.283E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.274E-06 | 1.506E-03 |
|---|
| sperm motility | GO:0030317 | | 5.789E-06 | 2.219E-03 |
|---|
| hexose biosynthetic process | GO:0019319 | | 1.04E-05 | 3.417E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.368E-05 | 3.933E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 1.408E-05 | 3.597E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 1.695E-05 | 3.898E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 1.695E-05 | 3.544E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 2.915E-08 | 6.703E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 2.439E-07 | 2.804E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.781E-07 | 3.665E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.615E-06 | 9.283E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.274E-06 | 1.506E-03 |
|---|
| sperm motility | GO:0030317 | | 5.789E-06 | 2.219E-03 |
|---|
| hexose biosynthetic process | GO:0019319 | | 1.04E-05 | 3.417E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.368E-05 | 3.933E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 1.408E-05 | 3.597E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 1.695E-05 | 3.898E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 1.695E-05 | 3.544E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| establishment of cell polarity | GO:0030010 | | 1.546E-08 | 2.85E-05 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 1.746E-06 | 1.608E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.518E-05 | 9.327E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.518E-05 | 6.995E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.518E-05 | 5.596E-03 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.137E-05 | 6.565E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.276E-05 | 5.992E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.276E-05 | 5.243E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.276E-05 | 4.66E-03 |
|---|
| establishment or maintenance of apical/basal cell polarity | GO:0035088 | | 2.276E-05 | 4.194E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.276E-05 | 3.813E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 2.915E-08 | 6.703E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 2.439E-07 | 2.804E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.781E-07 | 3.665E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.615E-06 | 9.283E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.274E-06 | 1.506E-03 |
|---|
| sperm motility | GO:0030317 | | 5.789E-06 | 2.219E-03 |
|---|
| hexose biosynthetic process | GO:0019319 | | 1.04E-05 | 3.417E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.368E-05 | 3.933E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 1.408E-05 | 3.597E-03 |
|---|
| establishment or maintenance of cell polarity | GO:0007163 | | 1.695E-05 | 3.898E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 1.695E-05 | 3.544E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| polyol catabolic process | GO:0046174 | | 1.98E-08 | 4.699E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 2.366E-07 | 2.807E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.33E-07 | 3.425E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.332E-06 | 7.905E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.005E-06 | 1.426E-03 |
|---|
| sperm motility | GO:0030317 | | 5.055E-06 | 1.999E-03 |
|---|
| hexose biosynthetic process | GO:0019319 | | 8.702E-06 | 2.95E-03 |
|---|
| monosaccharide biosynthetic process | GO:0046364 | | 1.155E-05 | 3.427E-03 |
|---|
| polyol metabolic process | GO:0019751 | | 1.496E-05 | 3.945E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.639E-05 | 3.89E-03 |
|---|
| establishment of apical/basal cell polarity | GO:0035089 | | 1.639E-05 | 3.537E-03 |
|---|
