Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5911-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1761 | 1.110e-02 | 8.429e-03 | 9.470e-02 |
|---|
| IPC-NIBC-129 | 0.2770 | 5.459e-02 | 7.825e-02 | 4.699e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2448 | 9.070e-03 | 1.522e-02 | 2.581e-01 |
|---|
| Loi_GPL570 | 0.2228 | 8.570e-02 | 9.607e-02 | 3.301e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1531 | 0.000e+00 | 6.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2443 | 4.383e-02 | 5.479e-02 | 3.663e-01 |
|---|
| Parker_GPL887 | 0.1324 | 4.158e-01 | 4.349e-01 | 4.612e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3295 | 4.031e-01 | 3.293e-01 | 9.324e-01 |
|---|
| Schmidt | 0.2521 | 2.850e-02 | 3.373e-02 | 2.954e-01 |
|---|
| Sotiriou | 0.3178 | 1.104e-02 | 8.470e-03 | 1.993e-01 |
|---|
| Van-De-Vijver | 0.2505 | 6.050e-04 | 8.710e-04 | 4.175e-02 |
|---|
| Zhang | 0.2491 | 1.489e-01 | 1.003e-01 | 3.057e-01 |
|---|
| Zhou | 0.4484 | 8.769e-02 | 7.849e-02 | 4.762e-01 |
|---|
Expression data for subnetwork 5911-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5911-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| mybl2 |   | 9 | 22 | 56 | 48 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.184 | 0.333 | 0.275 | 0.202 | 0.182 | 0.289 | 0.074 | 0.245 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| rap2a | | 1 | 116 | 174 | 178 | 0.044 | 0.174 | 0.038 | 0.112 | 0.074 | 0.171 | -0.097 | -0.103 | 0.211 | 0.046 | 0.055 | 0.042 | 0.050 |
|---|
| raf1 | | 2 | 78 | 123 | 121 | -0.086 | 0.062 | 0.099 | 0.225 | 0.069 | 0.133 | -0.229 | 0.001 | -0.111 | 0.125 | 0.053 | 0.018 | 0.347 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cks2 | | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 5911-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.199E-11 | 2.757E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.644E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.533E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.261E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.912E-12 | 7.113E-09 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 2.95E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 2.51E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.704E-06 | 2.689E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 2.714E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 3.9E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.437E-05 | 3.51E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.687E-05 | 3.747E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.593E-12 | 1.105E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.404E-07 | 1.131E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.011E-06 | 8.107E-04 |
|---|
| interphase | GO:0051325 | | 1.065E-06 | 6.408E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 2.924E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.437E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.172E-06 | 2.121E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 1.985E-03 |
|---|
| response to UV | GO:0009411 | | 1.015E-05 | 2.712E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 4.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.699E-05 | 3.716E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.912E-12 | 7.113E-09 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 2.95E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 2.51E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.704E-06 | 2.689E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 2.714E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 3.9E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.437E-05 | 3.51E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.687E-05 | 3.747E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.593E-12 | 1.105E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.404E-07 | 1.131E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.011E-06 | 8.107E-04 |
|---|
| interphase | GO:0051325 | | 1.065E-06 | 6.408E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 2.924E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.437E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.172E-06 | 2.121E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 1.985E-03 |
|---|
| response to UV | GO:0009411 | | 1.015E-05 | 2.712E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 4.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.699E-05 | 3.716E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.106E-13 | 1.823E-09 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.533E-11 | 9.88E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 5.971E-10 | 7.107E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 1.54E-09 | 1.375E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 1.236E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 6.677E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.093E-07 | 1.068E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.854E-07 | 1.274E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.004E-06 | 3.983E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.243E-06 | 4.439E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.759E-06 | 1.22E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.752E-13 | 1.004E-09 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.653E-11 | 1.761E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.627E-10 | 4.41E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 7.474E-10 | 6.816E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 8.208E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 6.82E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.122E-07 | 5.846E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.568E-07 | 7.15E-05 |
|---|
| interphase | GO:0051325 | | 1.731E-07 | 7.015E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.191E-06 | 4.344E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.302E-06 | 4.318E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.593E-12 | 1.105E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.404E-07 | 1.131E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.011E-06 | 8.107E-04 |
|---|
| interphase | GO:0051325 | | 1.065E-06 | 6.408E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 2.924E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 2.437E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.172E-06 | 2.121E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.599E-06 | 1.985E-03 |
|---|
| response to UV | GO:0009411 | | 1.015E-05 | 2.712E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.699E-05 | 4.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.699E-05 | 3.716E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.199E-11 | 2.757E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.644E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.533E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.261E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.199E-11 | 2.757E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.644E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.533E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.261E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.639E-06 | 0.01223513 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01631737 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 1.771E-05 | 0.01087825 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.771E-05 | 8.159E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.771E-05 | 6.527E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.771E-05 | 5.439E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.478E-05 | 6.523E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 5.708E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.302E-05 | 6.761E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 6.085E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.199E-11 | 2.757E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.644E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.533E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.261E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.407E-11 | 3.339E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.333E-06 | 1.582E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.931E-06 | 1.528E-03 |
|---|
| interphase | GO:0051325 | | 2.116E-06 | 1.255E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.06E-05 | 5.03E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.134E-05 | 4.486E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 4.43E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.589E-05 | 4.713E-03 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 4.21E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 5.275E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.962E-05 | 6.39E-03 |
|---|
