Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 57332-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1513 | 1.464e-02 | 1.153e-02 | 1.176e-01 |
|---|
| IPC-NIBC-129 | 0.2451 | 4.332e-02 | 6.274e-02 | 4.059e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2313 | 1.264e-02 | 2.061e-02 | 3.093e-01 |
|---|
| Loi_GPL570 | 0.1509 | 2.259e-01 | 2.456e-01 | 6.245e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1589 | 4.000e-06 | 4.100e-05 | 1.400e-05 |
|---|
| Parker_GPL1390 | 0.2290 | 6.130e-02 | 7.542e-02 | 4.395e-01 |
|---|
| Parker_GPL887 | 0.0322 | 4.818e-01 | 5.007e-01 | 5.412e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3403 | 8.944e-01 | 8.694e-01 | 9.998e-01 |
|---|
| Schmidt | 0.2287 | 1.827e-02 | 2.100e-02 | 2.199e-01 |
|---|
| Sotiriou | 0.2847 | 1.913e-02 | 1.493e-02 | 2.702e-01 |
|---|
| Van-De-Vijver | 0.2674 | 6.480e-04 | 9.320e-04 | 4.374e-02 |
|---|
| Zhang | 0.2762 | 1.365e-01 | 8.990e-02 | 2.846e-01 |
|---|
| Zhou | 0.4446 | 7.953e-02 | 6.921e-02 | 4.453e-01 |
|---|
Expression data for subnetwork 57332-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 57332-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| snrpe |   | 1 | 116 | 299 | 299 | -0.041 | 0.274 | 0.118 | 0.012 | 0.114 | 0.100 | 0.077 | 0.134 | 0.124 | 0.105 | 0.092 | 0.028 | 0.176 |
|---|
| ccnb2 | | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cks2 | | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| bard1 | | 2 | 78 | 232 | 224 | 0.016 | 0.161 | 0.164 | 0.042 | 0.137 | 0.017 | 0.139 | 0.153 | 0.022 | 0.142 | 0.097 | 0.122 | 0.276 |
|---|
| cbx8 | | 1 | 116 | 299 | 299 | 0.033 | -0.022 | 0.131 | -0.043 | 0.076 | 0.156 | 0.010 | 0.095 | -0.004 | 0.022 | 0.105 | 0.158 | 0.001 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| myst2 | | 2 | 78 | 232 | 224 | 0.094 | -0.045 | 0.049 | 0.001 | 0.128 | -0.004 | -0.235 | 0.006 | 0.002 | 0.212 | 0.092 | 0.133 | 0.212 |
|---|
| snrpf | | 1 | 116 | 299 | 299 | -0.077 | 0.229 | 0.130 | 0.078 | 0.130 | 0.127 | -0.176 | 0.141 | 0.045 | 0.160 | 0.065 | 0.002 | 0.241 |
|---|
| snrpg | | 1 | 116 | 299 | 299 | -0.068 | 0.217 | 0.120 | 0.108 | 0.092 | 0.134 | -0.077 | 0.265 | 0.253 | 0.069 | 0.040 | 0.291 | 0.174 |
|---|
| cstf1 | | 1 | 116 | 299 | 299 | 0.006 | 0.079 | 0.035 | 0.145 | 0.131 | -0.075 | -0.020 | 0.094 | 0.112 | 0.174 | 0.152 | -0.025 | 0.155 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 57332-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.783E-09 | 2.02E-05 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.338E-08 | 2.688E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 1.022E-05 | 7.839E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.501E-05 | 8.632E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 0.01133767 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.935E-05 | 0.01124961 |
|---|
| histone ubiquitination | GO:0016574 | | 2.935E-05 | 9.643E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 8.826E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.291E-05 | 8.412E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 8.661E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 8.583E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.924E-11 | 7.142E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 1.496E-06 |
|---|
| spliceosome assembly | GO:0000245 | | 1.878E-08 | 1.529E-05 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.085E-07 | 6.626E-05 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.486E-06 | 2.192E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.442E-05 | 3.915E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 1.442E-05 | 3.524E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 4.269E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 4.577E-11 | 1.101E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 2.8E-06 |
|---|
| spliceosome assembly | GO:0000245 | | 2.446E-08 | 1.962E-05 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.425E-07 | 8.572E-05 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 2.699E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 1.34E-05 | 4.029E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.874E-05 | 4.51E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 5.463E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.924E-11 | 7.142E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 1.496E-06 |
|---|
| spliceosome assembly | GO:0000245 | | 1.878E-08 | 1.529E-05 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.085E-07 | 6.626E-05 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.486E-06 | 2.192E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.442E-05 | 3.915E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 1.442E-05 | 3.524E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 4.269E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 4.577E-11 | 1.101E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 2.8E-06 |
|---|
| spliceosome assembly | GO:0000245 | | 2.446E-08 | 1.962E-05 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.425E-07 | 8.572E-05 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 2.699E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 1.34E-05 | 4.029E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.874E-05 | 4.51E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 5.463E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.198E-10 | 4.278E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.62E-10 | 8.25E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.652E-09 | 1.967E-06 |
|---|
| kinase regulator activity | GO:0019207 | | 4.256E-09 | 3.8E-06 |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 4.561E-09 | 3.257E-06 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 8.546E-09 | 5.087E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.997E-08 | 1.529E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.942E-07 | 8.67E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.736E-06 | 6.887E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 2.149E-06 | 7.673E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.378E-06 | 7.719E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.659E-10 | 9.699E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.609E-10 | 6.583E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.364E-09 | 1.659E-06 |
|---|
| kinase regulator activity | GO:0019207 | | 2.807E-09 | 2.56E-06 |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 2.809E-09 | 2.049E-06 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 4.633E-09 | 2.817E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.325E-08 | 1.212E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 2.316E-07 | 1.056E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 1.668E-06 | 6.761E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 2.454E-06 | 8.951E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 2.682E-06 | 8.896E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 4.577E-11 | 1.101E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 2.8E-06 |
|---|
| spliceosome assembly | GO:0000245 | | 2.446E-08 | 1.962E-05 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.425E-07 | 8.572E-05 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 2.699E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 1.34E-05 | 4.029E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 4.867E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.874E-05 | 4.51E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 5.463E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.338E-08 | 2.688E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 1.022E-05 | 7.839E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.501E-05 | 8.632E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 0.01133767 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.935E-05 | 0.01124961 |
|---|
| histone ubiquitination | GO:0016574 | | 2.935E-05 | 9.643E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 8.826E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.291E-05 | 8.412E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 8.661E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 8.583E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.338E-08 | 2.688E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 1.022E-05 | 7.839E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.501E-05 | 8.632E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 0.01133767 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.935E-05 | 0.01124961 |
|---|
| histone ubiquitination | GO:0016574 | | 2.935E-05 | 9.643E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 8.826E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.291E-05 | 8.412E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 8.661E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 8.583E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.91E-06 | 5.364E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.875E-06 | 6.335E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 2.298E-05 | 0.01411882 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.332E-05 | 0.01535117 |
|---|
| positive regulation of cell growth | GO:0030307 | | 4.923E-05 | 0.01814698 |
|---|
| thymus development | GO:0048538 | | 4.923E-05 | 0.01512248 |
|---|
| protein ubiquitination | GO:0016567 | | 5.799E-05 | 0.0152691 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.885E-05 | 0.01586168 |
|---|
| regulation of mRNA processing | GO:0050684 | | 6.885E-05 | 0.01409927 |
|---|
| mRNA cleavage | GO:0006379 | | 9.17E-05 | 0.01690109 |
|---|
| T cell homeostasis | GO:0043029 | | 9.17E-05 | 0.01536462 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.338E-08 | 2.688E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 1.022E-05 | 7.839E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.501E-05 | 8.632E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 0.01133767 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 2.935E-05 | 0.01124961 |
|---|
| histone ubiquitination | GO:0016574 | | 2.935E-05 | 9.643E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 8.826E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.291E-05 | 8.412E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 8.661E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 8.583E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.593E-09 | 8.527E-06 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.343E-08 | 2.78E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 9.409E-06 | 7.443E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.506E-05 | 8.934E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.735E-05 | 8.233E-03 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.914E-05 | 7.568E-03 |
|---|
| response to UV | GO:0009411 | | 2.119E-05 | 7.184E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.677E-05 | 7.941E-03 |
|---|
| histone ubiquitination | GO:0016574 | | 2.677E-05 | 7.059E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.225E-05 | 7.652E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.567E-05 | 7.695E-03 |
|---|
