Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 56895-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1972 | 1.196e-02 | 9.175e-03 | 1.005e-01 |
|---|
| IPC-NIBC-129 | 0.2772 | 2.789e-02 | 4.110e-02 | 2.991e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2412 | 3.171e-02 | 4.761e-02 | 4.854e-01 |
|---|
| Loi_GPL570 | 0.2132 | 9.793e-02 | 1.094e-01 | 3.636e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1605 | 0.000e+00 | 6.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.1861 | 5.313e-02 | 6.581e-02 | 4.072e-01 |
|---|
| Parker_GPL887 | 0.0787 | 3.658e-01 | 3.846e-01 | 3.997e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3884 | 6.475e-01 | 5.846e-01 | 9.909e-01 |
|---|
| Schmidt | 0.2387 | 3.000e-02 | 3.561e-02 | 3.053e-01 |
|---|
| Sotiriou | 0.3304 | 8.956e-03 | 6.828e-03 | 1.768e-01 |
|---|
| Van-De-Vijver | 0.2993 | 1.099e-03 | 1.581e-03 | 6.250e-02 |
|---|
| Zhang | 0.2460 | 1.332e-01 | 8.719e-02 | 2.789e-01 |
|---|
| Zhou | 0.4151 | 5.123e-02 | 3.902e-02 | 3.209e-01 |
|---|
Expression data for subnetwork 56895-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 56895-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn1a |   | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| ndufab1 | | 2 | 78 | 190 | 182 | -0.007 | 0.205 | 0.083 | 0.106 | 0.157 | 0.038 | -0.073 | 0.175 | 0.193 | 0.142 | 0.079 | 0.031 | 0.138 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| agpat4 | | 1 | 116 | 190 | 199 | -0.098 | 0.139 | 0.045 | -0.047 | 0.061 | undef | 0.230 | 0.102 | -0.009 | -0.091 | 0.071 | 0.212 | 0.277 |
|---|
| agpat1 | | 2 | 78 | 190 | 182 | -0.027 | 0.104 | 0.123 | 0.096 | 0.093 | 0.167 | 0.097 | 0.028 | 0.097 | 0.101 | 0.114 | 0.018 | -0.007 |
|---|
| top2a | | 15 | 11 | 163 | 134 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.147 | 0.234 | 0.273 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 56895-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 5.544E-04 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.092E-06 | 1.256E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.096E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.15E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.009E-03 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 2.785E-06 | 1.068E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 6.376E-06 | 2.095E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.048E-05 | 2.679E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 2.569E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.335E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphatidic acid metabolic process | GO:0046473 | | 3.071E-09 | 7.501E-06 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 6.244E-09 | 7.627E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.329E-08 | 5.968E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.573E-07 | 4.015E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.997E-07 | 3.419E-04 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.11E-06 | 4.518E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 2.351E-06 | 8.204E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 1.306E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.573E-06 | 1.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 1.159E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.743E-06 | 1.053E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.206E-08 | 2.902E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 1.703E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 8.957E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 6.906E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 6.088E-04 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.458E-06 | 5.849E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.249E-06 | 1.117E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 6.543E-06 | 1.968E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 1.766E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 1.589E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 1.445E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphatidic acid metabolic process | GO:0046473 | | 3.071E-09 | 7.501E-06 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 6.244E-09 | 7.627E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.329E-08 | 5.968E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.573E-07 | 4.015E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.997E-07 | 3.419E-04 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.11E-06 | 4.518E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 2.351E-06 | 8.204E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.277E-06 | 1.306E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.573E-06 | 1.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 1.159E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.743E-06 | 1.053E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.206E-08 | 2.902E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 1.703E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 8.957E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 6.906E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 6.088E-04 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.458E-06 | 5.849E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.249E-06 | 1.117E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 6.543E-06 | 1.968E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 1.766E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 1.589E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 1.445E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 3.147E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 2.607E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 3.088E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.013E-08 | 3.582E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 5.717E-08 | 4.083E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.516E-08 | 5.068E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.067E-07 | 5.444E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.099E-07 | 4.906E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 5.124E-07 | 2.033E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 6.346E-07 | 2.266E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.921E-06 | 6.237E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phospholipid:diacylglycerol acyltransferase activity | GO:0046027 | | 1.508E-09 | 5.503E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 1.539E-05 |
|---|
| 1-acylglycerol-3-phosphate O-acyltransferase activity | GO:0003841 | | 1.265E-08 | 1.539E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 1.45E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 3.33E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 3.329E-05 |
|---|
| acylglycerol O-acyltransferase activity | GO:0016411 | | 6.841E-08 | 3.565E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 3.694E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 3.412E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 3.071E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.049E-07 | 3.478E-05 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.206E-08 | 2.902E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 1.703E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 8.957E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 6.906E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 6.088E-04 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.458E-06 | 5.849E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.249E-06 | 1.117E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 6.543E-06 | 1.968E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 1.766E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 1.589E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 1.445E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.092E-06 | 1.256E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.096E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.15E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.009E-03 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 2.785E-06 | 1.068E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 6.376E-06 | 2.095E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.048E-05 | 2.679E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 2.569E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.335E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.092E-06 | 1.256E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.096E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.15E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.009E-03 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 2.785E-06 | 1.068E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 6.376E-06 | 2.095E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.048E-05 | 2.679E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 2.569E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.335E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.078E-05 | 0.01986237 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 1.181E-05 | 0.01088458 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01087825 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.771E-05 | 8.159E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.771E-05 | 6.527E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.771E-05 | 5.439E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.478E-05 | 6.523E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 5.708E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.302E-05 | 6.761E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 6.085E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.092E-06 | 1.256E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.43E-06 | 1.096E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2E-06 | 1.15E-03 |
|---|
| interphase | GO:0051325 | | 2.193E-06 | 1.009E-03 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 2.785E-06 | 1.068E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 6.376E-06 | 2.095E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 3.014E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.048E-05 | 2.679E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 2.569E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 2.335E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.601E-07 | 6.171E-04 |
|---|
| phospholipid biosynthetic process | GO:0008654 | | 1.122E-06 | 1.331E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.333E-06 | 1.054E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.931E-06 | 1.146E-03 |
|---|
| interphase | GO:0051325 | | 2.116E-06 | 1.004E-03 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 3.268E-06 | 1.292E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 7.704E-06 | 2.611E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.06E-05 | 3.144E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.06E-05 | 2.795E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.06E-05 | 2.515E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.134E-05 | 2.447E-03 |
|---|
