Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 55832-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1748 | 1.931e-02 | 1.578e-02 | 1.454e-01 |
|---|
| IPC-NIBC-129 | 0.2478 | 4.117e-02 | 5.976e-02 | 3.926e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2178 | 2.150e-02 | 3.344e-02 | 4.051e-01 |
|---|
| Loi_GPL570 | 0.2325 | 7.491e-02 | 8.429e-02 | 2.987e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1695 | 3.000e-06 | 3.500e-05 | 1.000e-05 |
|---|
| Parker_GPL1390 | 0.2043 | 6.841e-02 | 8.372e-02 | 4.653e-01 |
|---|
| Parker_GPL887 | 0.0010 | 4.190e-01 | 4.381e-01 | 4.651e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3741 | 9.997e-01 | 9.996e-01 | 1.000e+00 |
|---|
| Schmidt | 0.2210 | 8.783e-03 | 9.565e-03 | 1.301e-01 |
|---|
| Sotiriou | 0.2695 | 2.458e-02 | 1.934e-02 | 3.086e-01 |
|---|
| Van-De-Vijver | 0.2711 | 2.428e-03 | 3.487e-03 | 1.047e-01 |
|---|
| Zhang | 0.3205 | 1.163e-01 | 7.353e-02 | 2.493e-01 |
|---|
| Zhou | 0.3706 | 5.841e-02 | 4.635e-02 | 3.554e-01 |
|---|
Expression data for subnetwork 55832-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 55832-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| rbx1 | | 2 | 78 | 290 | 279 | -0.125 | 0.081 | 0.140 | 0.166 | 0.088 | 0.067 | 0.148 | 0.169 | 0.155 | -0.043 | -0.003 | 0.154 | 0.092 |
|---|
| pcna | | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| cand1 | | 1 | 116 | 290 | 291 | 0.154 | 0.122 | 0.159 | -0.036 | 0.124 | 0.135 | -0.185 | 0.117 | 0.008 | 0.162 | 0.133 | 0.150 | 0.391 |
|---|
| fen1 | | 9 | 22 | 133 | 112 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.242 | 0.056 | 0.114 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 55832-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 5.544E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01502775 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 0.01229785 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.674E-05 | 9.627E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 0.0107755 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 0.01196502 |
|---|
| induction of an organ | GO:0001759 | | 3.121E-05 | 0.01025573 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 3.121E-05 | 8.974E-03 |
|---|
| thymus development | GO:0048538 | | 4.011E-05 | 0.01024908 |
|---|
| thyroid gland development | GO:0030878 | | 5.01E-05 | 0.01152275 |
|---|
| UV protection | GO:0009650 | | 5.01E-05 | 0.01047522 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 4.92E-03 |
|---|
| muscle cell migration | GO:0014812 | | 4.364E-06 | 3.554E-03 |
|---|
| response to UV | GO:0009411 | | 6.934E-06 | 4.235E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 9.157E-06 | 4.474E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.969E-03 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 1.568E-05 | 5.474E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.769E-05 | 5.402E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.96E-05 | 5.32E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.394E-05 | 5.849E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.394E-05 | 5.317E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 6.053E-03 |
|---|
| muscle cell migration | GO:0014812 | | 5.087E-06 | 4.08E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 4.655E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 6.283E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.828E-05 | 5.498E-03 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 1.828E-05 | 4.887E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.208E-05 | 5.312E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.79E-05 | 6.103E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 4.92E-03 |
|---|
| muscle cell migration | GO:0014812 | | 4.364E-06 | 3.554E-03 |
|---|
| response to UV | GO:0009411 | | 6.934E-06 | 4.235E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 9.157E-06 | 4.474E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.969E-03 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 1.568E-05 | 5.474E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.769E-05 | 5.402E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.96E-05 | 5.32E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.394E-05 | 5.849E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.394E-05 | 5.317E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 6.053E-03 |
|---|
| muscle cell migration | GO:0014812 | | 5.087E-06 | 4.08E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 4.655E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 6.283E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.828E-05 | 5.498E-03 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 1.828E-05 | 4.887E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.208E-05 | 5.312E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.79E-05 | 6.103E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 4.494E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 4.334E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 4.006E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 3.643E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 4.142E-06 | 2.958E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 4.142E-06 | 2.465E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 4.142E-06 | 2.113E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 4.142E-06 | 1.849E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 4.142E-06 | 1.643E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 2.218E-03 |
|---|
| DNA replication factor C complex | GO:0005663 | | 6.21E-06 | 2.016E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 3.078E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 2.899E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 2.236E-03 |
|---|
| response to UV | GO:0009411 | | 2.113E-06 | 1.927E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 3.136E-06 | 2.288E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 3.136E-06 | 1.907E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 3.136E-06 | 1.634E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.43E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 1.906E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 4.703E-06 | 1.716E-03 |
|---|
| DNA replication factor C complex | GO:0005663 | | 4.703E-06 | 1.56E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 6.053E-03 |
|---|
| muscle cell migration | GO:0014812 | | 5.087E-06 | 4.08E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 4.655E-03 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 6.283E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.828E-05 | 5.498E-03 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 1.828E-05 | 4.887E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.208E-05 | 5.312E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.79E-05 | 6.103E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01502775 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 0.01229785 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.674E-05 | 9.627E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 0.0107755 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 0.01196502 |
|---|
| induction of an organ | GO:0001759 | | 3.121E-05 | 0.01025573 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 3.121E-05 | 8.974E-03 |
|---|
| thymus development | GO:0048538 | | 4.011E-05 | 0.01024908 |
|---|
| thyroid gland development | GO:0030878 | | 5.01E-05 | 0.01152275 |
|---|
| UV protection | GO:0009650 | | 5.01E-05 | 0.01047522 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01502775 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 0.01229785 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.674E-05 | 9.627E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 0.0107755 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 0.01196502 |
|---|
| induction of an organ | GO:0001759 | | 3.121E-05 | 0.01025573 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 3.121E-05 | 8.974E-03 |
|---|
| thymus development | GO:0048538 | | 4.011E-05 | 0.01024908 |
|---|
| thyroid gland development | GO:0030878 | | 5.01E-05 | 0.01152275 |
|---|
| UV protection | GO:0009650 | | 5.01E-05 | 0.01047522 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| muscle cell migration | GO:0014812 | | 8.861E-06 | 0.01633162 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 8.988E-06 | 8.282E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.329E-05 | 8.162E-03 |
|---|
| thymus development | GO:0048538 | | 1.329E-05 | 6.121E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.859E-05 | 6.853E-03 |
|---|
| UV protection | GO:0009650 | | 1.859E-05 | 5.711E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.859E-05 | 4.895E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.478E-05 | 5.708E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.478E-05 | 5.074E-03 |
|---|
| developmental induction | GO:0031128 | | 2.478E-05 | 4.566E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 3.184E-05 | 5.335E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 5.544E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01502775 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 0.01229785 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 1.674E-05 | 9.627E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 0.0107755 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 0.01196502 |
|---|
| induction of an organ | GO:0001759 | | 3.121E-05 | 0.01025573 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 3.121E-05 | 8.974E-03 |
|---|
| thymus development | GO:0048538 | | 4.011E-05 | 0.01024908 |
|---|
| thyroid gland development | GO:0030878 | | 5.01E-05 | 0.01152275 |
|---|
| UV protection | GO:0009650 | | 5.01E-05 | 0.01047522 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.601E-07 | 6.171E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01550567 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 0.01263026 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 0.0131875 |
|---|
| regulation of transcriptional preinitiation complex assembly | GO:0045898 | | 2.223E-05 | 0.01055 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.962E-05 | 0.01171476 |
|---|
| induction of an organ | GO:0001759 | | 3.806E-05 | 0.01290192 |
|---|
| regulation of transcription initiation from RNA polymerase II promoter | GO:0060260 | | 3.806E-05 | 0.01128918 |
|---|
| UV protection | GO:0009650 | | 4.754E-05 | 0.01253555 |
|---|
| thyroid gland development | GO:0030878 | | 5.807E-05 | 0.01378032 |
|---|
| thymus development | GO:0048538 | | 5.807E-05 | 0.01252756 |
|---|
