Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5424-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1948	2.524e-02	2.134e-02	1.777e-01
IPC-NIBC-129	0.2648	3.214e-02	4.712e-02	3.313e-01
Ivshina_GPL96-GPL97	0.2046	1.149e-02	1.889e-02	2.938e-01
Loi_GPL570	0.2064	1.076e-01	1.198e-01	3.887e-01
Loi_GPL96-GPL97	0.1595	1.000e-06	1.200e-05	1.000e-06
Parker_GPL1390	0.2334	3.330e-02	4.215e-02	3.130e-01
Parker_GPL887	0.0128	3.712e-01	3.901e-01	4.064e-01
Pawitan_GPL96-GPL97	0.3423	9.753e-01	9.689e-01	1.000e+00
Schmidt	0.2712	1.356e-02	1.526e-02	1.785e-01
Sotiriou	0.2596	2.889e-02	2.285e-02	3.355e-01
Van-De-Vijver	0.2890	1.217e-03	1.752e-03	6.691e-02
Zhang	0.2943	1.353e-01	8.894e-02	2.826e-01
Zhou	0.4093	7.814e-02	6.766e-02	4.399e-01

Expression data for subnetwork 5424-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Van-De-Vijver Zhang Zhou

Desmedt

Score for each gene in subnetwork 5424-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Van-De-Vijver	Zhang	Zhou
pold2		1	116	279	280	0.073	0.180	0.204	0.131	0.150	0.084	0.376	0.186	0.146	0.126	0.174	0.072	0.256
pcna		15	11	110	85	0.096	0.202	0.109	0.180	0.118	0.119	0.104	0.256	0.151	0.059	0.201	0.123	0.233
stmn2		29	9	34	27	0.057	0.106	0.005	0.052	0.110	0.071	-0.099	0.006	0.034	0.103	0.008	0.113	-0.039
tle1		47	6	1	3	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	0.170	0.068	0.025
ccnd1		92	2	18	12	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	undef	0.144	0.290
sp1		8	26	71	57	0.054	0.186	0.147	0.242	0.125	0.033	-0.370	0.202	0.284	0.227	0.304	0.091	-0.068
cdc2		96	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.162	0.297	0.336
hdac2		3	62	146	135	0.012	0.245	0.030	0.077	0.070	0.307	-0.204	0.183	0.222	-0.058	0.038	0.133	0.181
sfn		61	3	1	2	0.077	0.137	0.111	0.172	0.112	0.119	0.141	0.219	0.100	0.147	0.158	0.079	0.181
pold1		1	116	279	280	0.069	0.107	0.160	-0.033	0.102	0.109	0.104	0.121	0.144	0.148	0.230	0.006	0.410
top2a		15	11	163	134	0.147	0.183	0.185	0.100	0.206	0.014	0.035	0.309	0.261	0.183	0.147	0.234	0.273

GO Enrichment output for subnetwork 5424-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.247E-09	5.167E-06
nucleotide-excision repair	GO:0006289		3.255E-07	3.743E-04
base-excision repair	GO:0006284		2.552E-06	1.957E-03
positive regulation of viral genome replication	GO:0045070		1.241E-05	7.135E-03
regulation of retroviral genome replication	GO:0045091		1.241E-05	5.708E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.241E-05	4.757E-03
positive regulation of cell cycle	GO:0045787		1.762E-05	5.79E-03
DNA topological change	GO:0006265		1.86E-05	5.348E-03
response to UV	GO:0009411		1.884E-05	4.814E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.575E-05	5.922E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.602E-05	5.441E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.992E-10	4.868E-07
nucleotide-excision repair	GO:0006289		4.253E-08	5.195E-05
base-excision repair	GO:0006284		6.674E-07	5.435E-04
positive regulation of cell cycle	GO:0045787		3.496E-06	2.135E-03
positive regulation of viral genome replication	GO:0045070		3.653E-06	1.785E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		3.653E-06	1.487E-03
meiotic chromosome segregation	GO:0045132		3.653E-06	1.275E-03
response to UV	GO:0009411		5.287E-06	1.615E-03
regulation of retroviral genome replication	GO:0045091		5.477E-06	1.487E-03
establishment of spindle localization	GO:0051293		5.477E-06	1.338E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.892E-06	1.309E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.862E-10	9.293E-07
nucleotide-excision repair	GO:0006289		7.647E-08	9.199E-05
base-excision repair	GO:0006284		9.783E-07	7.846E-04
positive regulation of viral genome replication	GO:0045070		5.087E-06	3.06E-03
regulation of retroviral genome replication	GO:0045091		5.087E-06	2.448E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.087E-06	2.04E-03
meiotic chromosome segregation	GO:0045132		5.087E-06	1.748E-03
positive regulation of cell cycle	GO:0045787		5.728E-06	1.723E-03
establishment of spindle localization	GO:0051293		7.627E-06	2.039E-03
response to UV	GO:0009411		7.739E-06	1.862E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.648E-06	2.11E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.992E-10	4.868E-07
nucleotide-excision repair	GO:0006289		4.253E-08	5.195E-05
base-excision repair	GO:0006284		6.674E-07	5.435E-04
positive regulation of cell cycle	GO:0045787		3.496E-06	2.135E-03
positive regulation of viral genome replication	GO:0045070		3.653E-06	1.785E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		3.653E-06	1.487E-03
meiotic chromosome segregation	GO:0045132		3.653E-06	1.275E-03
response to UV	GO:0009411		5.287E-06	1.615E-03
regulation of retroviral genome replication	GO:0045091		5.477E-06	1.487E-03
establishment of spindle localization	GO:0051293		5.477E-06	1.338E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.892E-06	1.309E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.862E-10	9.293E-07
nucleotide-excision repair	GO:0006289		7.647E-08	9.199E-05
base-excision repair	GO:0006284		9.783E-07	7.846E-04
positive regulation of viral genome replication	GO:0045070		5.087E-06	3.06E-03
regulation of retroviral genome replication	GO:0045091		5.087E-06	2.448E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.087E-06	2.04E-03
meiotic chromosome segregation	GO:0045132		5.087E-06	1.748E-03
positive regulation of cell cycle	GO:0045787		5.728E-06	1.723E-03
establishment of spindle localization	GO:0051293		7.627E-06	2.039E-03
response to UV	GO:0009411		7.739E-06	1.862E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.648E-06	2.11E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.535E-10	9.054E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.259E-08	2.247E-05
nucleotide-excision repair	GO:0006289		3.589E-08	4.272E-05
base-excision repair	GO:0006284		2.975E-07	2.656E-04
DNA-directed DNA polymerase activity	GO:0003887		4.523E-07	3.23E-04
DNA polymerase activity	GO:0034061		7.31E-07	4.351E-04
replication fork	GO:0005657		1.002E-06	5.111E-04
response to UV	GO:0009411		4.081E-06	1.821E-03
embryonic camera-type eye development	GO:0031076		4.142E-06	1.643E-03
regulation of retroviral genome replication	GO:0045091		4.142E-06	1.479E-03
MutLalpha complex binding	GO:0032405		4.142E-06	1.344E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.532E-10	9.237E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.462E-08	2.667E-05
nucleotide-excision repair	GO:0006289		2.911E-08	3.539E-05
DNA-directed DNA polymerase activity	GO:0003887		5.964E-07	5.44E-04
replication fork	GO:0005657		9.46E-07	6.902E-04
DNA polymerase activity	GO:0034061		9.46E-07	5.752E-04
response to UV	GO:0009411		3.65E-06	1.902E-03
enucleate erythrocyte differentiation	GO:0043353		4.447E-06	2.028E-03
S phase	GO:0051320		4.447E-06	1.802E-03
positive regulation of viral reproduction	GO:0048524		4.447E-06	1.622E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		4.447E-06	1.475E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.862E-10	9.293E-07
nucleotide-excision repair	GO:0006289		7.647E-08	9.199E-05
base-excision repair	GO:0006284		9.783E-07	7.846E-04
positive regulation of viral genome replication	GO:0045070		5.087E-06	3.06E-03
regulation of retroviral genome replication	GO:0045091		5.087E-06	2.448E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.087E-06	2.04E-03
meiotic chromosome segregation	GO:0045132		5.087E-06	1.748E-03
positive regulation of cell cycle	GO:0045787		5.728E-06	1.723E-03
establishment of spindle localization	GO:0051293		7.627E-06	2.039E-03
response to UV	GO:0009411		7.739E-06	1.862E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.648E-06	2.11E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.247E-09	5.167E-06
nucleotide-excision repair	GO:0006289		3.255E-07	3.743E-04
base-excision repair	GO:0006284		2.552E-06	1.957E-03
positive regulation of viral genome replication	GO:0045070		1.241E-05	7.135E-03
regulation of retroviral genome replication	GO:0045091		1.241E-05	5.708E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.241E-05	4.757E-03
positive regulation of cell cycle	GO:0045787		1.762E-05	5.79E-03
DNA topological change	GO:0006265		1.86E-05	5.348E-03
response to UV	GO:0009411		1.884E-05	4.814E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.575E-05	5.922E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.602E-05	5.441E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.247E-09	5.167E-06
nucleotide-excision repair	GO:0006289		3.255E-07	3.743E-04
base-excision repair	GO:0006284		2.552E-06	1.957E-03
positive regulation of viral genome replication	GO:0045070		1.241E-05	7.135E-03
regulation of retroviral genome replication	GO:0045091		1.241E-05	5.708E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.241E-05	4.757E-03
positive regulation of cell cycle	GO:0045787		1.762E-05	5.79E-03
DNA topological change	GO:0006265		1.86E-05	5.348E-03
response to UV	GO:0009411		1.884E-05	4.814E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.575E-05	5.922E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.602E-05	5.441E-03

Van-De-Vijver file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.6E-09	2.948E-06
nucleotide-excision repair	GO:0006289		1.807E-07	1.665E-04
base-excision repair	GO:0006284		7.984E-07	4.905E-04
DNA replication	GO:0006260		5.661E-06	2.608E-03
chromosome segregation	GO:0007059		1.817E-05	6.696E-03
DNA synthesis during DNA repair	GO:0000731		1.897E-05	5.828E-03
positive regulation of viral reproduction	GO:0048524		1.897E-05	4.995E-03
positive regulation of cell growth	GO:0030307		2.844E-05	6.551E-03
phosphoinositide-mediated signaling	GO:0048015		3.039E-05	6.224E-03
keratinocyte proliferation	GO:0043616		3.978E-05	7.331E-03
release of cytochrome c from mitochondria	GO:0001836		5.3E-05	8.88E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.247E-09	5.167E-06
nucleotide-excision repair	GO:0006289		3.255E-07	3.743E-04
base-excision repair	GO:0006284		2.552E-06	1.957E-03
positive regulation of viral genome replication	GO:0045070		1.241E-05	7.135E-03
regulation of retroviral genome replication	GO:0045091		1.241E-05	5.708E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.241E-05	4.757E-03
positive regulation of cell cycle	GO:0045787		1.762E-05	5.79E-03
DNA topological change	GO:0006265		1.86E-05	5.348E-03
response to UV	GO:0009411		1.884E-05	4.814E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.575E-05	5.922E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.602E-05	5.441E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.647E-09	6.28E-06
nucleotide-excision repair	GO:0006289		3.424E-07	4.062E-04
base-excision repair	GO:0006284		3.005E-06	2.377E-03
positive regulation of viral genome replication	GO:0045070		1.166E-05	6.916E-03
regulation of retroviral genome replication	GO:0045091		1.166E-05	5.533E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.166E-05	4.611E-03
definitive hemopoiesis	GO:0060216		1.166E-05	3.952E-03
embryonic camera-type eye development	GO:0031076		1.747E-05	5.183E-03
response to UV	GO:0009411		1.846E-05	4.867E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.445E-05	5.802E-03
DNA topological change	GO:0006265		2.445E-05	5.274E-03