Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5291-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2174 | 1.004e-02 | 7.521e-03 | 8.744e-02 |
|---|
| IPC-NIBC-129 | 0.2318 | 5.985e-02 | 8.541e-02 | 4.965e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2497 | 1.827e-02 | 2.883e-02 | 3.739e-01 |
|---|
| Loi_GPL570 | 0.3110 | 2.440e-02 | 2.828e-02 | 1.206e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1646 | 1.000e-05 | 9.100e-05 | 6.600e-05 |
|---|
| Parker_GPL1390 | 0.2119 | 1.219e-01 | 1.448e-01 | 6.136e-01 |
|---|
| Parker_GPL887 | 0.1365 | 3.230e-01 | 3.413e-01 | 3.467e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3705 | 3.877e-01 | 3.142e-01 | 9.249e-01 |
|---|
| Schmidt | 0.1799 | 1.346e-02 | 1.515e-02 | 1.776e-01 |
|---|
| Sotiriou | 0.2984 | 1.526e-02 | 1.182e-02 | 2.389e-01 |
|---|
| Van-De-Vijver | 0.2438 | 7.290e-04 | 1.049e-03 | 4.741e-02 |
|---|
| Zhang | 0.2947 | 1.253e-01 | 8.074e-02 | 2.652e-01 |
|---|
| Zhou | 0.4380 | 6.039e-02 | 4.840e-02 | 3.644e-01 |
|---|
Expression data for subnetwork 5291-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5291-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| nfatc4 | | 15 | 11 | 1 | 5 | 0.094 | -0.056 | -0.021 | 0.204 | 0.079 | -0.008 | 0.243 | 0.060 | 0.077 | -0.012 | 0.136 | 0.131 | 0.154 |
|---|
| pik3cb | | 1 | 116 | 140 | 145 | 0.068 | 0.131 | 0.089 | 0.086 | 0.094 | 0.045 | -0.504 | 0.104 | 0.066 | 0.042 | 0.011 | 0.117 | 0.245 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| ywhaq | | 5 | 40 | 1 | 9 | 0.129 | 0.110 | 0.049 | 0.116 | 0.071 | 0.160 | -0.210 | 0.038 | 0.007 | 0.054 | 0.072 | 0.138 | 0.187 |
|---|
| cdc25b | | 4 | 50 | 140 | 128 | 0.197 | 0.107 | 0.134 | 0.223 | 0.092 | 0.194 | 0.071 | 0.200 | 0.067 | 0.115 | undef | 0.048 | 0.153 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 5291-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 |  | 3.388E-09 | 7.793E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 1.745E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 1.635E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.496E-07 | 3.12E-04 |
|---|
| interphase | GO:0051325 | | 1.042E-06 | 2.995E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 1.94E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 1.803E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 1.639E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 6.408E-10 | 1.565E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 1.522E-09 | 1.859E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 2.299E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.726E-07 | 1.054E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.972E-07 | 9.637E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.013E-07 | 8.196E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.544E-07 | 8.88E-05 |
|---|
| platelet activation | GO:0030168 | | 3.06E-07 | 9.345E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 6.181E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 7.341E-04 |
|---|
| female meiosis | GO:0007143 | | 3.005E-06 | 6.674E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 9.939E-10 | 2.391E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 2.127E-09 | 2.559E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 3.508E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.727E-07 | 1.039E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.049E-07 | 9.862E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.669E-07 | 1.07E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 1.193E-04 |
|---|
| platelet activation | GO:0030168 | | 3.74E-07 | 1.125E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 7.642E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 8.238E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 6.408E-10 | 1.565E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 1.522E-09 | 1.859E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 2.299E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.726E-07 | 1.054E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.972E-07 | 9.637E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.013E-07 | 8.196E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.544E-07 | 8.88E-05 |
|---|
| platelet activation | GO:0030168 | | 3.06E-07 | 9.345E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 6.181E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 7.341E-04 |
|---|
| female meiosis | GO:0007143 | | 3.005E-06 | 6.674E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 9.939E-10 | 2.391E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 2.127E-09 | 2.559E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 3.508E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.727E-07 | 1.039E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.049E-07 | 9.862E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.669E-07 | 1.07E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 1.193E-04 |
|---|
| platelet activation | GO:0030168 | | 3.74E-07 | 1.125E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 7.642E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 8.238E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 5.213E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.099E-07 | 1.963E-04 |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 1.787E-07 | 2.128E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 2.108E-03 |
|---|
| protein N-terminus binding | GO:0047485 | | 2.689E-06 | 1.92E-03 |
|---|
| phosphatidylinositol-4.5-bisphosphate 3-kinase activity | GO:0046934 | | 3.314E-06 | 1.972E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 1.69E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.218E-03 |
|---|
| insulin receptor substrate binding | GO:0043560 | | 4.969E-06 | 1.972E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 2.301E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 2.258E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 5.799E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.049E-07 | 1.913E-04 |
|---|
| interphase | GO:0051325 | | 1.158E-07 | 1.408E-04 |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 1.711E-07 | 1.561E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 1.342E-03 |
|---|
| protein N-terminus binding | GO:0047485 | | 2.573E-06 | 1.564E-03 |
|---|
| phosphatidylinositol-4.5-bisphosphate 3-kinase activity | GO:0046934 | | 3.136E-06 | 1.634E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.43E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.271E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 1.716E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 1.56E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 9.939E-10 | 2.391E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 2.127E-09 | 2.559E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 3.508E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.727E-07 | 1.039E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.049E-07 | 9.862E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.669E-07 | 1.07E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 1.193E-04 |
|---|
| platelet activation | GO:0030168 | | 3.74E-07 | 1.125E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 7.642E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 8.238E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 1.745E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 1.635E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.496E-07 | 3.12E-04 |
|---|
| interphase | GO:0051325 | | 1.042E-06 | 2.995E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 1.94E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 1.803E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 1.639E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 1.745E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 1.635E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.496E-07 | 3.12E-04 |
|---|
| interphase | GO:0051325 | | 1.042E-06 | 2.995E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 1.94E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 1.803E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 1.639E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell growth | GO:0030307 | | 6.331E-06 | 0.01166884 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.331E-06 | 5.834E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 6.331E-06 | 3.89E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.331E-06 | 2.917E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.861E-06 | 3.266E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.861E-06 | 2.722E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.181E-05 | 3.11E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.181E-05 | 2.721E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 1.518E-05 | 3.109E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.518E-05 | 2.798E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 1.518E-05 | 2.544E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 1.31E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 1.745E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 1.635E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.496E-07 | 3.12E-04 |
|---|
| interphase | GO:0051325 | | 1.042E-06 | 2.995E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 1.94E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 1.803E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 1.639E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 4.57E-09 | 1.084E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.042E-07 | 1.237E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 4.984E-07 | 3.943E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 5.861E-07 | 3.477E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.784E-07 | 3.694E-04 |
|---|
| platelet activation | GO:0030168 | | 7.909E-07 | 3.128E-04 |
|---|
| interphase | GO:0051325 | | 8.529E-07 | 2.891E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.062E-06 | 3.152E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.723E-06 | 1.773E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.867E-06 | 1.629E-03 |
|---|
| female meiosis | GO:0007143 | | 6.867E-06 | 1.481E-03 |
|---|
