Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5147-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1839 | 2.024e-02 | 1.664e-02 | 1.507e-01 |
|---|
| IPC-NIBC-129 | 0.2526 | 5.676e-02 | 8.121e-02 | 4.811e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2155 | 3.810e-03 | 6.885e-03 | 1.553e-01 |
|---|
| Loi_GPL570 | 0.2645 | 4.766e-02 | 5.430e-02 | 2.103e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1550 | 2.000e-06 | 2.600e-05 | 6.000e-06 |
|---|
| Parker_GPL1390 | 0.2841 | 6.346e-02 | 7.794e-02 | 4.475e-01 |
|---|
| Parker_GPL887 | 0.0357 | 3.966e-01 | 4.156e-01 | 4.376e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3846 | 8.771e-01 | 8.486e-01 | 9.997e-01 |
|---|
| Schmidt | 0.2263 | 1.666e-02 | 1.904e-02 | 2.064e-01 |
|---|
| Sotiriou | 0.3052 | 1.362e-02 | 1.051e-02 | 2.243e-01 |
|---|
| Van-De-Vijver | 0.2476 | 1.917e-03 | 2.755e-03 | 9.000e-02 |
|---|
| Zhang | 0.2818 | 1.448e-01 | 9.684e-02 | 2.988e-01 |
|---|
| Zhou | 0.3839 | 5.305e-02 | 4.085e-02 | 3.298e-01 |
|---|
Expression data for subnetwork 5147-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5147-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| pde6d | | 1 | 116 | 230 | 234 | -0.143 | 0.231 | 0.090 | 0.068 | 0.064 | 0.079 | -0.155 | 0.043 | -0.073 | -0.095 | 0.026 | 0.073 | 0.135 |
|---|
| irak1 | | 5 | 40 | 42 | 36 | -0.016 | 0.242 | 0.007 | 0.133 | 0.108 | 0.303 | 0.257 | 0.133 | 0.177 | 0.084 | 0.199 | -0.026 | 0.081 |
|---|
| mybl2 | | 9 | 22 | 56 | 48 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.184 | 0.333 | 0.275 | 0.202 | 0.182 | 0.289 | 0.074 | 0.245 |
|---|
| prkci | | 14 | 15 | 31 | 26 | 0.065 | 0.104 | 0.012 | 0.170 | 0.112 | 0.088 | -0.103 | -0.170 | 0.196 | 0.128 | 0.049 | 0.124 | 0.149 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| fadd | | 4 | 50 | 42 | 40 | 0.121 | -0.009 | 0.155 | 0.307 | 0.166 | 0.119 | 0.084 | 0.300 | 0.070 | 0.116 | 0.051 | 0.032 | 0.243 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| hras | | 14 | 15 | 42 | 34 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.195 | 0.022 | 0.245 | 0.086 | 0.208 | 0.180 | 0.003 | 0.197 |
|---|
| dapk1 | | 1 | 116 | 230 | 234 | 0.082 | 0.188 | -0.078 | -0.063 | 0.067 | 0.083 | -0.195 | 0.267 | 0.117 | 0.059 | 0.069 | 0.142 | 0.230 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| naca | | 3 | 62 | 42 | 45 | 0.052 | 0.141 | 0.119 | 0.132 | 0.102 | -0.017 | -0.128 | 0.081 | 0.076 | 0.100 | -0.184 | 0.147 | 0.138 |
|---|
| map2k1 | | 10 | 20 | 54 | 44 | 0.154 | 0.096 | 0.093 | 0.013 | 0.095 | 0.045 | -0.223 | 0.207 | 0.082 | 0.096 | undef | undef | 0.230 |
|---|
GO Enrichment output for subnetwork 5147-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.007E-07 | 6.916E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 8.187E-06 | 9.415E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.231E-05 | 9.441E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 8.825E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.646E-05 | 7.571E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 1.86E-05 | 7.13E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 2.602E-05 | 6.65E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.467E-05 | 7.25E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.329E-08 | 1.79E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 4.277E-06 | 5.224E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.573E-06 | 3.724E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 5.894E-06 | 3.6E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 5.894E-06 | 2.88E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 7.112E-06 | 2.896E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 9.952E-06 | 3.473E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 4.05E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.326E-05 | 3.6E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.326E-05 | 3.24E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.326E-05 | 2.946E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 4.069E-06 | 4.895E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 4.636E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 5.78E-06 | 3.477E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 7.005E-06 | 3.371E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 8.353E-06 | 3.349E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 1.169E-05 | 4.017E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 4.685E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.558E-05 | 4.164E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.558E-05 | 3.748E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.558E-05 | 3.407E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.329E-08 | 1.79E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 4.277E-06 | 5.224E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.573E-06 | 3.724E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 5.894E-06 | 3.6E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 5.894E-06 | 2.88E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 7.112E-06 | 2.896E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 9.952E-06 | 3.473E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.326E-05 | 4.05E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.326E-05 | 3.6E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.326E-05 | 3.24E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.326E-05 | 2.946E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 4.069E-06 | 4.895E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 4.636E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 5.78E-06 | 3.477E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 7.005E-06 | 3.371E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 8.353E-06 | 3.349E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 1.169E-05 | 4.017E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 4.685E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.558E-05 | 4.164E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.558E-05 | 3.748E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.558E-05 | 3.407E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 2.033E-04 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 3.71E-06 | 6.625E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 5.001E-06 | 5.953E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.143E-06 | 5.485E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 6.993E-06 | 4.995E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.105E-06 | 5.419E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 9.105E-06 | 4.645E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 9.105E-06 | 4.064E-03 |
|---|
| establishment of apical/basal cell polarity | GO:0035089 | | 9.105E-06 | 3.613E-03 |
|---|
| eye photoreceptor cell differentiation | GO:0001754 | | 1.274E-05 | 4.55E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.274E-05 | 4.136E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.43E-08 | 1.251E-04 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 2.357E-06 | 4.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.177E-06 | 3.864E-03 |
|---|
| NF-kappaB-inducing kinase activity | GO:0004704 | | 4.447E-06 | 4.055E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 3.244E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.007E-06 | 3.652E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 3.475E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 6.667E-06 | 3.04E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 7.896E-06 | 3.201E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 9.33E-06 | 3.404E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 9.33E-06 | 3.094E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.936E-08 | 2.391E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 4.069E-06 | 4.895E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 4.636E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 5.78E-06 | 3.477E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 7.005E-06 | 3.371E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 8.353E-06 | 3.349E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 1.169E-05 | 4.017E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.558E-05 | 4.685E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.558E-05 | 4.164E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.558E-05 | 3.748E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.558E-05 | 3.407E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.007E-07 | 6.916E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 8.187E-06 | 9.415E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.231E-05 | 9.441E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 8.825E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.646E-05 | 7.571E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 1.86E-05 | 7.13E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 2.602E-05 | 6.65E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.467E-05 | 7.25E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.007E-07 | 6.916E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 8.187E-06 | 9.415E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.231E-05 | 9.441E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 8.825E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.646E-05 | 7.571E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 1.86E-05 | 7.13E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 2.602E-05 | 6.65E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.467E-05 | 7.25E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 3.858E-06 | 7.11E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.897E-05 | 0.0174829 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 1.897E-05 | 0.01165527 |
|---|
| activation of NF-kappaB-inducing kinase activity | GO:0007250 | | 1.897E-05 | 8.741E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.897E-05 | 6.993E-03 |
|---|
| establishment of cell polarity | GO:0030010 | | 1.897E-05 | 5.828E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.844E-05 | 7.487E-03 |
|---|
| establishment or maintenance of apical/basal cell polarity | GO:0035088 | | 2.844E-05 | 6.551E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.844E-05 | 5.823E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.978E-05 | 7.331E-03 |
|---|
| visual behavior | GO:0007632 | | 3.978E-05 | 6.665E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.007E-07 | 6.916E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 8.187E-06 | 9.415E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.231E-05 | 9.441E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 8.825E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.646E-05 | 7.571E-03 |
|---|
| photoreceptor cell development | GO:0042461 | | 1.86E-05 | 7.13E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 2.602E-05 | 6.65E-03 |
|---|
| establishment or maintenance of epithelial cell apical/basal polarity | GO:0045197 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.833E-07 | 9.095E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 1.023E-05 | 0.01213975 |
|---|
| establishment of apical/basal cell polarity | GO:0035089 | | 1.277E-05 | 0.01009832 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.506E-05 | 8.934E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.735E-05 | 8.233E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.914E-05 | 7.568E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 2.404E-05 | 8.15E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.677E-05 | 7.941E-03 |
|---|
| eye photoreceptor cell differentiation | GO:0001754 | | 2.677E-05 | 7.059E-03 |
|---|
| lipopolysaccharide-mediated signaling pathway | GO:0031663 | | 2.677E-05 | 6.353E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.567E-05 | 7.695E-03 |
|---|
