Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 51283-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1910 | 9.843e-03 | 7.357e-03 | 8.610e-02 |
|---|
| IPC-NIBC-129 | 0.2971 | 3.650e-02 | 5.324e-02 | 3.619e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2506 | 1.265e-02 | 2.062e-02 | 3.093e-01 |
|---|
| Loi_GPL570 | 0.2312 | 7.628e-02 | 8.579e-02 | 3.028e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1571 | 0.000e+00 | 2.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2290 | 6.888e-02 | 8.426e-02 | 4.669e-01 |
|---|
| Parker_GPL887 | 0.0879 | 3.800e-01 | 3.989e-01 | 4.172e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3983 | 6.005e-01 | 5.333e-01 | 9.856e-01 |
|---|
| Schmidt | 0.2205 | 1.927e-02 | 2.223e-02 | 2.280e-01 |
|---|
| Sotiriou | 0.3163 | 1.133e-02 | 8.695e-03 | 2.022e-01 |
|---|
| Van-De-Vijver | 0.2798 | 8.700e-04 | 1.252e-03 | 5.344e-02 |
|---|
| Zhang | 0.2730 | 1.402e-01 | 9.303e-02 | 2.911e-01 |
|---|
| Zhou | 0.4281 | 4.672e-02 | 3.456e-02 | 2.982e-01 |
|---|
Expression data for subnetwork 51283-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 51283-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| bax | | 3 | 62 | 1 | 14 | 0.029 | 0.185 | 0.233 | 0.192 | 0.088 | -0.043 | 0.184 | 0.172 | 0.175 | 0.019 | -0.029 | 0.041 | 0.235 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| bfar | | 1 | 116 | 136 | 140 | -0.056 | 0.119 | 0.049 | 0.198 | 0.089 | 0.176 | -0.362 | 0.086 | -0.042 | 0.127 | -0.039 | 0.032 | 0.131 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 51283-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.438E-09 | 3.308E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.087E-08 | 2.399E-05 |
|---|
| interphase | GO:0051325 | | 2.344E-08 | 1.797E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.467E-08 | 5.443E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 5.543E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.458E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 4.383E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.646E-09 | 4.454E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.765E-08 | 1.437E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 2.865E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.871E-06 | 1.403E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.653E-06 | 1.487E-03 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 1.845E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.477E-06 | 1.673E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 7.665E-06 | 2.081E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.005E-05 | 2.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 2.269E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.489E-09 | 6.603E-06 |
|---|
| interphase | GO:0051325 | | 6.425E-09 | 5.153E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.796E-08 | 1.682E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.654E-07 | 3.202E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 1.631E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 1.59E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 1.391E-03 |
|---|
| response to UV | GO:0009411 | | 6.692E-06 | 1.789E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 9.704E-06 | 2.335E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 2.829E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.646E-09 | 4.454E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.765E-08 | 1.437E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 2.865E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.871E-06 | 1.403E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.653E-06 | 1.487E-03 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 1.845E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.477E-06 | 1.673E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 7.665E-06 | 2.081E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.005E-05 | 2.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 2.269E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.489E-09 | 6.603E-06 |
|---|
| interphase | GO:0051325 | | 6.425E-09 | 5.153E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.796E-08 | 1.682E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.654E-07 | 3.202E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 1.631E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 1.59E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 1.391E-03 |
|---|
| response to UV | GO:0009411 | | 6.692E-06 | 1.789E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 9.704E-06 | 2.335E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 2.829E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 3.255E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.163E-09 | 2.077E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 1.498E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.722E-08 | 1.537E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 2.646E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 3.967E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.164E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 6.31E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 6.044E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 2.61E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 2.939E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.058E-10 | 1.105E-06 |
|---|
| interphase | GO:0051325 | | 6.861E-10 | 8.343E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.461E-09 | 5.893E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.869E-09 | 5.741E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 5.131E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 2.378E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 5.475E-08 | 2.496E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 2.219E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 2.955E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 2.791E-05 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.489E-09 | 6.603E-06 |
|---|
| interphase | GO:0051325 | | 6.425E-09 | 5.153E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.796E-08 | 1.682E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.654E-07 | 3.202E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 1.631E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 1.59E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 1.391E-03 |
|---|
| response to UV | GO:0009411 | | 6.692E-06 | 1.789E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 9.704E-06 | 2.335E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 2.829E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.087E-08 | 2.399E-05 |
|---|
| interphase | GO:0051325 | | 2.344E-08 | 1.797E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.467E-08 | 5.443E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 5.543E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.458E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 4.383E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.087E-08 | 2.399E-05 |
|---|
| interphase | GO:0051325 | | 2.344E-08 | 1.797E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.467E-08 | 5.443E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 5.543E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.458E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 4.383E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of caspase activity | GO:0043281 | | 6.764E-06 | 0.01246561 |
|---|
| regulation of endopeptidase activity | GO:0052548 | | 7.281E-06 | 6.709E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 8.861E-06 | 5.444E-03 |
|---|
| regulation of peptidase activity | GO:0052547 | | 9.611E-06 | 4.428E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.329E-05 | 4.897E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.329E-05 | 4.081E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.329E-05 | 3.498E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.329E-05 | 3.061E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.859E-05 | 3.807E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.859E-05 | 3.426E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.478E-05 | 4.151E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.087E-08 | 2.399E-05 |
|---|
| interphase | GO:0051325 | | 2.344E-08 | 1.797E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.467E-08 | 5.443E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 5.543E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.842E-06 | 3.389E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.873E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.458E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 4.383E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.666E-09 | 3.953E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.099E-08 | 2.491E-05 |
|---|
| interphase | GO:0051325 | | 2.355E-08 | 1.863E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.836E-08 | 5.835E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.143E-06 | 5.426E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.59E-06 | 3.793E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 9.737E-06 | 3.301E-03 |
|---|
| response to UV | GO:0009411 | | 1.371E-05 | 4.066E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.438E-05 | 3.791E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.012E-05 | 4.773E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 2.012E-05 | 4.339E-03 |
|---|
