Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 50944-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1994 | 8.898e-03 | 6.560e-03 | 7.942e-02 |
|---|
| IPC-NIBC-129 | 0.2562 | 9.360e-02 | 1.305e-01 | 6.327e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2555 | 2.485e-02 | 3.814e-02 | 4.340e-01 |
|---|
| Loi_GPL570 | 0.2452 | 6.264e-02 | 7.084e-02 | 2.607e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1569 | 2.000e-06 | 2.100e-05 | 4.000e-06 |
|---|
| Parker_GPL1390 | 0.1976 | 1.023e-01 | 1.227e-01 | 5.668e-01 |
|---|
| Parker_GPL887 | 0.1418 | 3.608e-01 | 3.796e-01 | 3.935e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3510 | 3.685e-01 | 2.956e-01 | 9.146e-01 |
|---|
| Schmidt | 0.1924 | 2.304e-02 | 2.691e-02 | 2.572e-01 |
|---|
| Sotiriou | 0.3169 | 1.121e-02 | 8.601e-03 | 2.010e-01 |
|---|
| Van-De-Vijver | 0.2106 | 4.660e-04 | 6.700e-04 | 3.485e-02 |
|---|
| Zhang | 0.2621 | 1.406e-01 | 9.336e-02 | 2.917e-01 |
|---|
| Zhou | 0.4629 | 7.216e-02 | 6.103e-02 | 4.157e-01 |
|---|
Expression data for subnetwork 50944-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 50944-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| cep55 | | 6 | 35 | 207 | 187 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.189 | 0.115 | 0.330 |
|---|
| krt18 | | 6 | 35 | 184 | 166 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | -0.024 | -0.114 | 0.222 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| pcnt | | 4 | 50 | 207 | 197 | -0.013 | 0.258 | 0.082 | -0.128 | 0.086 | 0.111 | 0.033 | 0.154 | 0.087 | 0.042 | 0.086 | 0.252 | 0.255 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| shank1 | | 1 | 116 | 207 | 217 | 0.082 | 0.125 | 0.000 | 0.065 | 0.077 | -0.062 | -0.091 | 0.000 | 0.130 | 0.115 | undef | -0.039 | 0.006 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| rps6ka3 | | 4 | 50 | 207 | 197 | 0.022 | 0.223 | 0.086 | 0.078 | 0.077 | 0.113 | -0.212 | 0.155 | 0.142 | -0.004 | -0.084 | 0.057 | -0.071 |
|---|
GO Enrichment output for subnetwork 50944-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 2.352E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 2.774E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.688E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.985E-07 | 2.424E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.321E-07 | 1.89E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.028E-06 | 2.46E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 1.968E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 1.777E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.284E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 6.934E-06 | 2.117E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 6.934E-06 | 1.882E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 8.144E-06 | 1.99E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 9.157E-06 | 2.034E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 2.421E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.069E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.2E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.334E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.985E-07 | 2.424E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.321E-07 | 1.89E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.028E-06 | 2.46E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 1.968E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 1.777E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.284E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 6.934E-06 | 2.117E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 6.934E-06 | 1.882E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 8.144E-06 | 1.99E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 9.157E-06 | 2.034E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 2.421E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.069E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.2E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.334E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 8.667E-05 |
|---|
| microtubule organizing center part | GO:0044450 | | 1.002E-06 | 1.789E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 4.006E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 3.697E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 4.435E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.21E-06 | 3.696E-03 |
|---|
| cytoskeletal anchoring at plasma membrane | GO:0007016 | | 8.691E-06 | 4.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 3.879E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 3.448E-03 |
|---|
| centriolar satellite | GO:0034451 | | 8.691E-06 | 3.104E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.178E-06 | 2.98E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 8.681E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.448E-06 | 4.465E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 3.763E-06 | 4.576E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.763E-06 | 3.432E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 2.745E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 3.431E-03 |
|---|
| cytoskeletal anchoring at plasma membrane | GO:0007016 | | 5.642E-06 | 2.94E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.642E-06 | 2.573E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.642E-06 | 2.287E-03 |
|---|
| centriolar satellite | GO:0034451 | | 7.896E-06 | 2.881E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.002E-06 | 2.985E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 2.421E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.04E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 1.748E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.069E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.2E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.334E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 2.352E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 2.774E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.688E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 2.352E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 2.774E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.688E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.431E-05 | 0.02638188 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 1.53E-05 | 0.01410351 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01087825 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.771E-05 | 8.159E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.771E-05 | 6.527E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.771E-05 | 5.439E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.478E-05 | 6.523E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 5.708E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.302E-05 | 6.761E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 6.085E-03 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 3.78E-05 | 6.333E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 2.352E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 2.774E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.688E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.042E-07 | 2.474E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.723E-06 | 7.977E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.867E-06 | 5.432E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.029E-05 | 6.108E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.441E-05 | 6.837E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.92E-05 | 7.593E-03 |
|---|
| cytoskeletal anchoring at plasma membrane | GO:0007016 | | 1.92E-05 | 6.508E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.92E-05 | 5.695E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.082E-05 | 8.127E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.082E-05 | 7.314E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.082E-05 | 6.649E-03 |
|---|
