Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3151-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1806 | 9.489e-03 | 7.058e-03 | 8.362e-02 |
|---|
| IPC-NIBC-129 | 0.2577 | 1.076e-01 | 1.488e-01 | 6.760e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2524 | 1.435e-02 | 2.314e-02 | 3.306e-01 |
|---|
| Loi_GPL570 | 0.2436 | 6.405e-02 | 7.239e-02 | 2.652e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1530 | 1.000e-06 | 1.900e-05 | 3.000e-06 |
|---|
| Parker_GPL1390 | 0.2231 | 8.568e-02 | 1.037e-01 | 5.208e-01 |
|---|
| Parker_GPL887 | 0.1455 | 4.046e-01 | 4.236e-01 | 4.475e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3492 | 3.556e-01 | 2.832e-01 | 9.070e-01 |
|---|
| Schmidt | 0.2051 | 2.732e-02 | 3.225e-02 | 2.876e-01 |
|---|
| Sotiriou | 0.3166 | 1.127e-02 | 8.649e-03 | 2.016e-01 |
|---|
| Van-De-Vijver | 0.2002 | 6.410e-04 | 9.220e-04 | 4.341e-02 |
|---|
| Zhang | 0.2517 | 1.490e-01 | 1.004e-01 | 3.059e-01 |
|---|
| Zhou | 0.4452 | 7.334e-02 | 6.233e-02 | 4.205e-01 |
|---|
Expression data for subnetwork 3151-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3151-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| hmgn2 | | 1 | 116 | 227 | 231 | -0.060 | 0.108 | 0.026 | 0.178 | 0.085 | undef | -0.049 | -0.016 | 0.083 | 0.055 | undef | 0.066 | 0.253 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| hmgn1 | | 1 | 116 | 227 | 231 | -0.044 | 0.110 | 0.095 | -0.064 | 0.081 | 0.138 | -0.177 | 0.110 | 0.213 | 0.088 | -0.014 | -0.031 | 0.308 |
|---|
| cep55 | | 6 | 35 | 207 | 187 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.189 | 0.115 | 0.330 |
|---|
| krt18 | | 6 | 35 | 184 | 166 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | -0.024 | -0.114 | 0.222 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| pcnt | | 4 | 50 | 207 | 197 | -0.013 | 0.258 | 0.082 | -0.128 | 0.086 | 0.111 | 0.033 | 0.154 | 0.087 | 0.042 | 0.086 | 0.252 | 0.255 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| rps6ka3 | | 4 | 50 | 207 | 197 | 0.022 | 0.223 | 0.086 | 0.078 | 0.077 | 0.113 | -0.212 | 0.155 | 0.142 | -0.004 | -0.084 | 0.057 | -0.071 |
|---|
GO Enrichment output for subnetwork 3151-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 |  | 1.786E-07 | 4.108E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 6.074E-07 | 4.657E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.881E-07 | 3.956E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 7.33E-07 | 3.372E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 7.33E-07 | 2.81E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.736E-06 | 8.991E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 3.107E-06 | 8.932E-04 |
|---|
| cell junction assembly | GO:0034329 | | 3.505E-06 | 8.957E-04 |
|---|
| cell junction organization | GO:0034330 | | 5.817E-06 | 1.338E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 1.048E-05 | 2.192E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 7.61E-08 | 1.859E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 1.057E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.783E-07 | 2.267E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 2.814E-07 | 1.719E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 3.255E-07 | 1.59E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 3.928E-07 | 1.599E-04 |
|---|
| cell junction assembly | GO:0034329 | | 1.541E-06 | 5.377E-04 |
|---|
| cell junction organization | GO:0034330 | | 2.655E-06 | 8.109E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 1.395E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 5.165E-06 | 1.262E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 1.147E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 9.735E-08 | 2.342E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 1.432E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 2.757E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 3.6E-07 | 2.165E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 1.942E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 4.272E-07 | 1.713E-04 |
|---|
| cell junction assembly | GO:0034329 | | 1.78E-06 | 6.117E-04 |
|---|
| cell junction organization | GO:0034330 | | 3.12E-06 | 9.384E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 1.625E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 1.462E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 1.35E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 7.61E-08 | 1.859E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 1.057E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.783E-07 | 2.267E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 2.814E-07 | 1.719E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 3.255E-07 | 1.59E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 3.928E-07 | 1.599E-04 |
|---|
| cell junction assembly | GO:0034329 | | 1.541E-06 | 5.377E-04 |
|---|
| cell junction organization | GO:0034330 | | 2.655E-06 | 8.109E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 1.395E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 5.165E-06 | 1.262E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 1.147E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 9.735E-08 | 2.342E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 1.432E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 2.757E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 3.6E-07 | 2.165E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 1.942E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 4.272E-07 | 1.713E-04 |
|---|
| cell junction assembly | GO:0034329 | | 1.78E-06 | 6.117E-04 |
|---|
| cell junction organization | GO:0034330 | | 3.12E-06 | 9.384E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 1.625E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 1.462E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 1.35E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 8.667E-05 |
|---|
| microtubule organizing center part | GO:0044450 | | 1.002E-06 | 1.789E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 4.006E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 3.697E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 4.435E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.21E-06 | 3.696E-03 |
|---|
| vinculin binding | GO:0017166 | | 6.21E-06 | 3.168E-03 |
|---|
| positive transcription elongation factor activity | GO:0008159 | | 6.21E-06 | 2.772E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 3.448E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 3.104E-03 |
|---|
| centriolar satellite | GO:0034451 | | 8.691E-06 | 2.821E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.43E-08 | 1.251E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.177E-06 | 5.795E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 4.447E-06 | 5.407E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 4.447E-06 | 4.055E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 3.244E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 4.054E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.667E-06 | 3.475E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.667E-06 | 3.04E-03 |
|---|
| positive transcription elongation factor activity | GO:0008159 | | 6.667E-06 | 2.702E-03 |
|---|
| centriolar satellite | GO:0034451 | | 9.33E-06 | 3.404E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.167E-05 | 3.871E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 9.735E-08 | 2.342E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.191E-07 | 1.432E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.437E-07 | 2.757E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 3.6E-07 | 2.165E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.036E-07 | 1.942E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 4.272E-07 | 1.713E-04 |
|---|
| cell junction assembly | GO:0034329 | | 1.78E-06 | 6.117E-04 |
|---|
| cell junction organization | GO:0034330 | | 3.12E-06 | 9.384E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.077E-06 | 1.625E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.077E-06 | 1.462E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 6.172E-06 | 1.35E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 1.786E-07 | 4.108E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 6.074E-07 | 4.657E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.881E-07 | 3.956E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 7.33E-07 | 3.372E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 7.33E-07 | 2.81E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.736E-06 | 8.991E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 3.107E-06 | 8.932E-04 |
|---|
| cell junction assembly | GO:0034329 | | 3.505E-06 | 8.957E-04 |
|---|
| cell junction organization | GO:0034330 | | 5.817E-06 | 1.338E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 1.048E-05 | 2.192E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 1.786E-07 | 4.108E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 6.074E-07 | 4.657E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.881E-07 | 3.956E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 7.33E-07 | 3.372E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 7.33E-07 | 2.81E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.736E-06 | 8.991E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 3.107E-06 | 8.932E-04 |
|---|
| cell junction assembly | GO:0034329 | | 3.505E-06 | 8.957E-04 |
|---|
| cell junction organization | GO:0034330 | | 5.817E-06 | 1.338E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 1.048E-05 | 2.192E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.137E-05 | 0.03939172 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.276E-05 | 0.02097134 |
|---|
| focal adhesion formation | GO:0048041 | | 2.276E-05 | 0.0139809 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.276E-05 | 0.01048567 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.276E-05 | 8.389E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.276E-05 | 6.99E-03 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.285E-05 | 6.016E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.184E-05 | 7.335E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.184E-05 | 6.52E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.242E-05 | 7.819E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 1.786E-07 | 4.108E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 6.074E-07 | 4.657E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 6.881E-07 | 3.956E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 7.33E-07 | 3.372E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 7.33E-07 | 2.81E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 2.736E-06 | 8.991E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 3.107E-06 | 8.932E-04 |
|---|
| cell junction assembly | GO:0034329 | | 3.505E-06 | 8.957E-04 |
|---|
| cell junction organization | GO:0034330 | | 5.817E-06 | 1.338E-03 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 1.048E-05 | 2.192E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| focal adhesion formation | GO:0048041 | | 1.617E-07 | 3.838E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.691E-07 | 2.006E-04 |
|---|
| cell-substrate junction assembly | GO:0007044 | | 5.978E-07 | 4.728E-04 |
|---|
| actin filament bundle formation | GO:0051017 | | 5.978E-07 | 3.546E-04 |
|---|
| cell junction assembly | GO:0034329 | | 2.953E-06 | 1.401E-03 |
|---|
| cell junction organization | GO:0034330 | | 4.746E-06 | 1.877E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.632E-06 | 2.926E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.551E-06 | 2.833E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.294E-05 | 3.412E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.811E-05 | 4.297E-03 |
|---|
| negative regulation of cell motion | GO:0051271 | | 2.206E-05 | 4.76E-03 |
|---|
