Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3021-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1629 | 9.462e-03 | 7.035e-03 | 8.343e-02 |
|---|
| IPC-NIBC-129 | 0.2548 | 7.661e-02 | 1.080e-01 | 5.708e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2525 | 2.858e-03 | 5.291e-03 | 1.299e-01 |
|---|
| Loi_GPL570 | 0.2828 | 3.669e-02 | 4.209e-02 | 1.700e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1539 | 2.000e-06 | 2.200e-05 | 4.000e-06 |
|---|
| Parker_GPL1390 | 0.2972 | 6.868e-02 | 8.403e-02 | 4.662e-01 |
|---|
| Parker_GPL887 | 0.1147 | 4.498e-01 | 4.689e-01 | 5.026e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3627 | 4.751e-01 | 4.015e-01 | 9.596e-01 |
|---|
| Schmidt | 0.2207 | 1.393e-02 | 1.571e-02 | 1.820e-01 |
|---|
| Sotiriou | 0.3416 | 7.424e-03 | 5.630e-03 | 1.586e-01 |
|---|
| Van-De-Vijver | 0.2255 | 6.120e-04 | 8.810e-04 | 4.208e-02 |
|---|
| Zhang | 0.2927 | 1.472e-01 | 9.885e-02 | 3.028e-01 |
|---|
| Zhou | 0.4477 | 6.485e-02 | 5.312e-02 | 3.845e-01 |
|---|
Expression data for subnetwork 3021-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3021-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| h3f3b | | 1 | 116 | 117 | 126 | -0.105 | 0.035 | 0.060 | 0.111 | 0.131 | 0.206 | -0.033 | -0.059 | 0.135 | 0.127 | 0.071 | -0.041 | 0.325 |
|---|
| ehmt2 | | 1 | 116 | 117 | 126 | 0.031 | 0.136 | 0.105 | -0.097 | 0.067 | 0.352 | -0.428 | 0.164 | 0.010 | 0.133 | 0.069 | 0.028 | 0.170 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| ard1a | | 2 | 78 | 117 | 115 | 0.019 | 0.141 | 0.130 | 0.229 | 0.128 | 0.205 | 0.064 | 0.218 | 0.139 | 0.061 | 0.112 | 0.014 | 0.124 |
|---|
GO Enrichment output for subnetwork 3021-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.438E-09 | 3.308E-06 |
|---|
| chromatin assembly | GO:0031497 | | 1.185E-06 | 1.362E-03 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.442E-06 | 1.105E-03 |
|---|
| nucleosome organization | GO:0034728 | | 1.66E-06 | 9.545E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 3.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.622E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.498E-05 | 4.308E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.498E-05 | 3.829E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 2.096E-05 | 4.383E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.349E-10 | 3.295E-07 |
|---|
| nucleosome assembly | GO:0006334 | | 1.574E-07 | 1.923E-04 |
|---|
| chromatin assembly | GO:0031497 | | 1.648E-07 | 1.342E-04 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.972E-07 | 1.205E-04 |
|---|
| nucleosome organization | GO:0034728 | | 2.245E-07 | 1.097E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 9.271E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.049E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.376E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.306E-06 | 1.712E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.306E-06 | 1.541E-03 |
|---|
| organ growth | GO:0035265 | | 6.306E-06 | 1.4E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.312E-10 | 5.562E-07 |
|---|
| nucleosome assembly | GO:0006334 | | 2.217E-07 | 2.667E-04 |
|---|
| chromatin assembly | GO:0031497 | | 2.324E-07 | 1.864E-04 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 2.792E-07 | 1.68E-04 |
|---|
| nucleosome organization | GO:0034728 | | 3.051E-07 | 1.468E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 1.274E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.295E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.133E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 7.903E-06 | 2.113E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 7.903E-06 | 1.902E-03 |
|---|
| organ growth | GO:0035265 | | 7.903E-06 | 1.729E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.349E-10 | 3.295E-07 |
|---|
| nucleosome assembly | GO:0006334 | | 1.574E-07 | 1.923E-04 |
|---|
| chromatin assembly | GO:0031497 | | 1.648E-07 | 1.342E-04 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.972E-07 | 1.205E-04 |
|---|
| nucleosome organization | GO:0034728 | | 2.245E-07 | 1.097E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 9.271E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.049E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.376E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.306E-06 | 1.712E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.306E-06 | 1.541E-03 |
|---|
| organ growth | GO:0035265 | | 6.306E-06 | 1.4E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.312E-10 | 5.562E-07 |
|---|
| nucleosome assembly | GO:0006334 | | 2.217E-07 | 2.667E-04 |
|---|
| chromatin assembly | GO:0031497 | | 2.324E-07 | 1.864E-04 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 2.792E-07 | 1.68E-04 |
|---|
| nucleosome organization | GO:0034728 | | 3.051E-07 | 1.468E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 1.274E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.295E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.133E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 7.903E-06 | 2.113E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 7.903E-06 | 1.902E-03 |
|---|
| organ growth | GO:0035265 | | 7.903E-06 | 1.729E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.57E-11 | 1.632E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 4.216E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 3.944E-03 |
|---|
| organ growth | GO:0035265 | | 3.314E-06 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 3.549E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 3.836E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.954E-06 | 3.548E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 6.954E-06 | 3.104E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.954E-06 | 2.759E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 2.483E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.258E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 3.354E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 3.813E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 2.86E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 3.431E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 2.859E-03 |
|---|
| sex chromatin | GO:0001739 | | 4.703E-06 | 2.451E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.703E-06 | 2.144E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.582E-06 | 2.668E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.769E-06 | 2.469E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.773E-06 | 2.909E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.312E-10 | 5.562E-07 |
|---|
| nucleosome assembly | GO:0006334 | | 2.217E-07 | 2.667E-04 |
|---|
| chromatin assembly | GO:0031497 | | 2.324E-07 | 1.864E-04 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 2.792E-07 | 1.68E-04 |
|---|
| nucleosome organization | GO:0034728 | | 3.051E-07 | 1.468E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 1.274E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.295E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.133E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 7.903E-06 | 2.113E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 7.903E-06 | 1.902E-03 |
|---|
| organ growth | GO:0035265 | | 7.903E-06 | 1.729E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| chromatin assembly | GO:0031497 | | 1.185E-06 | 1.362E-03 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.442E-06 | 1.105E-03 |
|---|
| nucleosome organization | GO:0034728 | | 1.66E-06 | 9.545E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 3.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.622E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.498E-05 | 4.308E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.498E-05 | 3.829E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 2.096E-05 | 4.383E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| chromatin assembly | GO:0031497 | | 1.185E-06 | 1.362E-03 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.442E-06 | 1.105E-03 |
|---|
| nucleosome organization | GO:0034728 | | 1.66E-06 | 9.545E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 3.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.622E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.498E-05 | 4.308E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.498E-05 | 3.829E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 2.096E-05 | 4.383E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| meiotic prophase I | GO:0007128 | | 8.861E-06 | 0.01633162 |
|---|
| histone methylation | GO:0016571 | | 8.861E-06 | 8.166E-03 |
|---|
| N-terminal protein amino acid modification | GO:0031365 | | 1.329E-05 | 8.162E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.329E-05 | 6.121E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.329E-05 | 4.897E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.329E-05 | 4.081E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.329E-05 | 3.498E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.859E-05 | 4.283E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.859E-05 | 3.807E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.478E-05 | 4.566E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.478E-05 | 4.151E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| chromatin assembly | GO:0031497 | | 1.185E-06 | 1.362E-03 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 1.442E-06 | 1.105E-03 |
|---|
| nucleosome organization | GO:0034728 | | 1.66E-06 | 9.545E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 3.831E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.622E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.498E-05 | 4.308E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.498E-05 | 3.829E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.822E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 2.096E-05 | 4.383E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.182E-09 | 5.178E-06 |
|---|
| nucleosome assembly | GO:0006334 | | 2.116E-06 | 2.51E-03 |
|---|
| protein-DNA complex assembly | GO:0065004 | | 2.523E-06 | 1.996E-03 |
|---|
| nucleosome organization | GO:0034728 | | 2.865E-06 | 1.699E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.06E-05 | 5.03E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 5.169E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.589E-05 | 5.386E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.589E-05 | 4.713E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 5.861E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 2.223E-05 | 5.275E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 2.223E-05 | 4.795E-03 |
|---|
