Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 29842-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1632 | 3.241e-02 | 2.826e-02 | 2.132e-01 |
|---|
| IPC-NIBC-129 | 0.2401 | 1.755e-01 | 2.346e-01 | 8.189e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.1923 | 1.946e-02 | 3.053e-02 | 3.858e-01 |
|---|
| Loi_GPL570 | 0.2381 | 6.928e-02 | 7.813e-02 | 2.816e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1858 | 6.000e-06 | 5.500e-05 | 2.500e-05 |
|---|
| Parker_GPL1390 | 0.2090 | 3.883e-02 | 4.881e-02 | 3.421e-01 |
|---|
| Parker_GPL887 | 0.0434 | 4.490e-01 | 4.681e-01 | 5.017e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3336 | 8.368e-01 | 8.007e-01 | 9.994e-01 |
|---|
| Schmidt | 0.2606 | 1.467e-02 | 1.661e-02 | 1.888e-01 |
|---|
| Sotiriou | 0.2866 | 1.855e-02 | 1.446e-02 | 2.657e-01 |
|---|
| Van-De-Vijver | 0.1630 | 1.122e-03 | 1.615e-03 | 6.339e-02 |
|---|
| Zhang | 0.2895 | 9.085e-02 | 5.386e-02 | 2.023e-01 |
|---|
| Zhou | 0.4139 | 8.450e-02 | 7.484e-02 | 4.643e-01 |
|---|
Expression data for subnetwork 29842-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 29842-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| sfrs3 |   | 2 | 78 | 1 | 18 | -0.089 | 0.148 | 0.132 | 0.066 | 0.078 | 0.168 | -0.112 | -0.008 | 0.168 | 0.102 | 0.049 | 0.102 | 0.315 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cks2 | | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| srpk1 | | 3 | 62 | 178 | 167 | 0.013 | 0.261 | 0.105 | 0.234 | 0.112 | 0.272 | -0.071 | 0.144 | 0.241 | 0.115 | 0.035 | 0.050 | 0.193 |
|---|
| top2a | | 15 | 11 | 163 | 134 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.147 | 0.234 | 0.273 |
|---|
| tfcp2l1 | | 1 | 116 | 304 | 304 | 0.001 | -0.025 | -0.106 | 0.105 | 0.096 | 0.075 | -0.238 | 0.043 | 0.108 | 0.066 | 0.011 | 0.069 | 0.129 |
|---|
GO Enrichment output for subnetwork 29842-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.371E-05 | 4.506E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.546E-05 | 4.446E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 4.728E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 4.587E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.578E-07 | 3.856E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.232E-06 | 1.505E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.409E-06 | 1.147E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 6.544E-06 | 3.997E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.876E-06 | 3.359E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.031E-05 | 3.148E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.031E-05 | 2.798E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 3.376E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 4.269E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-07 | 7.326E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.021E-06 | 2.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.39E-06 | 1.917E-03 |
|---|
| interphase | GO:0051325 | | 2.707E-06 | 1.628E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.574E-06 | 4.607E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.574E-06 | 3.839E-03 |
|---|
| muscle cell migration | GO:0014812 | | 9.574E-06 | 3.291E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.071E-05 | 3.222E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.315E-05 | 3.516E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.435E-05 | 3.453E-03 |
|---|
| response to UV | GO:0009411 | | 2.02E-05 | 4.419E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.578E-07 | 3.856E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.232E-06 | 1.505E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.409E-06 | 1.147E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 6.544E-06 | 3.997E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.876E-06 | 3.359E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.031E-05 | 3.148E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.031E-05 | 2.798E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 3.376E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 4.269E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-07 | 7.326E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.021E-06 | 2.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.39E-06 | 1.917E-03 |
|---|
| interphase | GO:0051325 | | 2.707E-06 | 1.628E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.574E-06 | 4.607E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.574E-06 | 3.839E-03 |
|---|
| muscle cell migration | GO:0014812 | | 9.574E-06 | 3.291E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.071E-05 | 3.222E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.315E-05 | 3.516E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.435E-05 | 3.453E-03 |
|---|
| response to UV | GO:0009411 | | 2.02E-05 | 4.419E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 2.247E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 2.889E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 5.951E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 1.01E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 9.066E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.824E-07 | 9.306E-05 |
|---|
| epithelial cell differentiation | GO:0030855 | | 2.739E-06 | 1.223E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.335E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.457E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.142E-06 | 1.344E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.653E-11 | 3.522E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 2.052E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 2.894E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 6.227E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.122E-07 | 8.184E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 7.365E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.568E-07 | 8.172E-05 |
|---|
| interphase | GO:0051325 | | 1.731E-07 | 7.892E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.448E-06 | 9.922E-04 |
|---|
| epithelial cell differentiation | GO:0030855 | | 2.448E-06 | 8.93E-04 |
|---|
| response to UV | GO:0009411 | | 2.813E-06 | 9.328E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-07 | 7.326E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.021E-06 | 2.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.39E-06 | 1.917E-03 |
|---|
| interphase | GO:0051325 | | 2.707E-06 | 1.628E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 9.574E-06 | 4.607E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 9.574E-06 | 3.839E-03 |
|---|
| muscle cell migration | GO:0014812 | | 9.574E-06 | 3.291E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.071E-05 | 3.222E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.315E-05 | 3.516E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.435E-05 | 3.453E-03 |
|---|
| response to UV | GO:0009411 | | 2.02E-05 | 4.419E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.371E-05 | 4.506E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.546E-05 | 4.446E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 4.728E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 4.587E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.371E-05 | 4.506E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.546E-05 | 4.446E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 4.728E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 4.587E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.808E-06 | 3.332E-03 |
|---|
| chromosome segregation | GO:0007059 | | 8.543E-06 | 7.872E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.181E-05 | 7.256E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 1.181E-05 | 5.442E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.431E-05 | 5.276E-03 |
|---|
| multicellular organismal aging | GO:0010259 | | 1.771E-05 | 5.439E-03 |
|---|
| thymus development | GO:0048538 | | 1.771E-05 | 4.662E-03 |
|---|
| gland development | GO:0048732 | | 1.855E-05 | 4.272E-03 |
|---|
| regulation of mRNA processing | GO:0050684 | | 2.478E-05 | 5.074E-03 |
|---|
| induction of an organ | GO:0001759 | | 2.478E-05 | 4.566E-03 |
|---|
| thyroid gland development | GO:0030878 | | 3.302E-05 | 5.532E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.371E-05 | 4.506E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.546E-05 | 4.446E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 4.728E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 4.587E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.601E-07 | 6.171E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.333E-06 | 1.582E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.931E-06 | 1.528E-03 |
|---|
| interphase | GO:0051325 | | 2.116E-06 | 1.255E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.06E-05 | 5.03E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.06E-05 | 4.192E-03 |
|---|
| determination of adult lifespan | GO:0008340 | | 1.06E-05 | 3.593E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.876E-03 |
|---|
| epithelial cell differentiation | GO:0030855 | | 1.307E-05 | 3.446E-03 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 3.789E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 4.795E-03 |
|---|
