Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2885-3-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.19431.242e-029.579e-031.035e-01
IPC-NIBC-1290.28301.738e-022.603e-022.082e-01
Ivshina_GPL96-GPL970.23938.231e-031.393e-022.445e-01
Loi_GPL5700.22807.974e-028.956e-023.130e-01
Loi_GPL96-GPL970.15480.000e+004.000e-060.000e+00
Parker_GPL13900.24884.164e-025.217e-023.559e-01
Parker_GPL8870.01533.723e-013.912e-014.077e-01
Pawitan_GPL96-GPL970.37899.670e-019.585e-011.000e+00
Schmidt0.25571.752e-022.009e-022.137e-01
Sotiriou0.34477.042e-035.332e-031.537e-01
Van-De-Vijver0.33321.171e-031.686e-036.522e-02
Zhang0.27871.451e-019.706e-022.992e-01
Zhou0.41155.589e-024.374e-023.435e-01

Expression data for subnetwork 2885-3-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 2885-3-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
pcnaPCNA on ITI PCNA on NCBI1511110850.0960.2020.1090.1800.1180.1190.1040.2560.1510.0590.2010.1230.233
mybl2MYBL2 on ITI MYBL2 on NCBI92256480.1620.2370.1660.0790.1240.1840.3330.2750.2020.1820.2890.0740.245
bat2BAT2 on ITI BAT2 on NCBI36274680.0390.182-0.001-0.0130.062undef-0.3350.1090.1860.099undef0.0590.146
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
dhx9DHX9 on ITI DHX9 on NCBI1116129136-0.0040.1650.099-0.0940.103undef-0.0290.1270.1550.1350.0940.0070.234
sp1SP1 on ITI SP1 on NCBI82671570.0540.1860.1470.2420.1250.033-0.3700.2020.2840.2270.3040.091-0.068
hnrnpa1HNRNPA1 on ITI HNRNPA1 on NCBI1116129136-0.0210.2090.088-0.0200.0870.131undef0.0820.0360.089undef0.0830.195
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
p4ha2P4HA2 on ITI P4HA2 on NCBI36274680.0770.3130.0700.1590.1490.2160.0560.1800.0550.1050.2110.0430.237
sfnSFN on ITI SFN on NCBI613120.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.1580.0790.181
grb2GRB2 on ITI GRB2 on NCBI922170.084-0.0130.086-0.0310.162-0.0380.0030.0650.1580.1270.1490.194-0.005

GO Enrichment output for subnetwork 2885-3-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO1.266E-050.02911443
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.851E-050.02128154
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.096E-050.0160718
keratinocyte proliferationGO:0043616GO:0043616 on GO2.793E-050.01606199
positive regulation of cell growthGO:0030307GO:0030307 on GO6.568E-050.03021449
negative regulation of caspase activityGO:0043154GO:0043154 on GO9.045E-050.0346738
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO9.045E-050.0297204
positive regulation of cell sizeGO:0045793GO:0045793 on GO1.043E-040.02998787
negative regulation of cell cycle processGO:0010948GO:0010948 on GO1.043E-040.02665588
skin developmentGO:0043588GO:0043588 on GO1.043E-040.0239903
cellular response to unfolded proteinGO:0034620GO:0034620 on GO1.191E-040.02490978


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO2.593E-066.334E-03
meiotic chromosome segregationGO:0045132GO:0045132 on GO3.005E-063.67E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.372E-063.56E-03
establishment of spindle localizationGO:0051293GO:0051293 on GO4.506E-062.752E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO8.405E-064.107E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.649E-056.715E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO2.337E-058.158E-03
negative regulation of caspase activityGO:0043154GO:0043154 on GO2.726E-058.325E-03
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO2.726E-057.4E-03
positive regulation of cell sizeGO:0045793GO:0045793 on GO3.592E-058.776E-03
nucleotide-excision repair. DNA gap fillingGO:0006297GO:0006297 on GO3.592E-057.979E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
meiotic chromosome segregationGO:0045132GO:0045132 on GO4.185E-060.01006818
positive regulation of cell cycleGO:0045787GO:0045787 on GO4.249E-065.112E-03
establishment of spindle localizationGO:0051293GO:0051293 on GO6.274E-065.032E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.162E-064.308E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.17E-055.631E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.504E-056.031E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO2.754E-059.466E-03
negative regulation of caspase activityGO:0043154GO:0043154 on GO3.794E-050.01141156
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO3.794E-050.0101436
positive regulation of cell sizeGO:0045793GO:0045793 on GO4.376E-050.01052955
nucleotide-excision repair. DNA gap fillingGO:0006297GO:0006297 on GO5E-050.01093543


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO2.593E-066.334E-03
meiotic chromosome segregationGO:0045132GO:0045132 on GO3.005E-063.67E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.372E-063.56E-03
establishment of spindle localizationGO:0051293GO:0051293 on GO4.506E-062.752E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO8.405E-064.107E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.649E-056.715E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO2.337E-058.158E-03
negative regulation of caspase activityGO:0043154GO:0043154 on GO2.726E-058.325E-03
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO2.726E-057.4E-03
positive regulation of cell sizeGO:0045793GO:0045793 on GO3.592E-058.776E-03
nucleotide-excision repair. DNA gap fillingGO:0006297GO:0006297 on GO3.592E-057.979E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
meiotic chromosome segregationGO:0045132GO:0045132 on GO4.185E-060.01006818
positive regulation of cell cycleGO:0045787GO:0045787 on GO4.249E-065.112E-03
establishment of spindle localizationGO:0051293GO:0051293 on GO6.274E-065.032E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.162E-064.308E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.17E-055.631E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.504E-056.031E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO2.754E-059.466E-03
negative regulation of caspase activityGO:0043154GO:0043154 on GO3.794E-050.01141156
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO3.794E-050.0101436
positive regulation of cell sizeGO:0045793GO:0045793 on GO4.376E-050.01052955
nucleotide-excision repair. DNA gap fillingGO:0006297GO:0006297 on GO5E-050.01093543


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO8.812E-093.147E-05
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.045E-065.437E-03
embryonic camera-type eye developmentGO:0031076GO:0031076 on GO3.314E-063.944E-03
MutLalpha complex bindingGO:0032405GO:0032405 on GO3.314E-062.958E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO4.969E-063.549E-03
insulin receptor substrate bindingGO:0043560GO:0043560 on GO4.969E-062.957E-03
enucleate erythrocyte differentiationGO:0043353GO:0043353 on GO4.969E-062.535E-03
superoxide-generating NADPH oxidase activityGO:0016175GO:0016175 on GO4.969E-062.218E-03
DNA replication factor C complexGO:0005663GO:0005663 on GO4.969E-061.972E-03
definitive hemopoiesisGO:0060216GO:0060216 on GO4.969E-061.774E-03
procollagen-proline dioxygenase activityGO:0019798GO:0019798 on GO4.969E-061.613E-03


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO1.462E-085.334E-05
enucleate erythrocyte differentiationGO:0043353GO:0043353 on GO4.447E-068.111E-03
RNA polymerase II carboxy-terminal domain kinase activityGO:0008353GO:0008353 on GO4.447E-065.407E-03
epidermal growth factor receptor bindingGO:0005154GO:0005154 on GO4.447E-064.055E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.344E-063.899E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO6.667E-064.054E-03
embryonic camera-type eye developmentGO:0031076GO:0031076 on GO6.667E-063.475E-03
MutLalpha complex bindingGO:0032405GO:0032405 on GO6.667E-063.04E-03
DNA replication factor C complexGO:0005663GO:0005663 on GO6.667E-062.702E-03
insulin receptor substrate bindingGO:0043560GO:0043560 on GO9.33E-063.404E-03
procollagen-proline dioxygenase activityGO:0019798GO:0019798 on GO9.33E-063.094E-03


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
meiotic chromosome segregationGO:0045132GO:0045132 on GO4.185E-060.01006818
positive regulation of cell cycleGO:0045787GO:0045787 on GO4.249E-065.112E-03
establishment of spindle localizationGO:0051293GO:0051293 on GO6.274E-065.032E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.162E-064.308E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.17E-055.631E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.504E-056.031E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO2.754E-059.466E-03
negative regulation of caspase activityGO:0043154GO:0043154 on GO3.794E-050.01141156
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO3.794E-050.0101436
positive regulation of cell sizeGO:0045793GO:0045793 on GO4.376E-050.01052955
nucleotide-excision repair. DNA gap fillingGO:0006297GO:0006297 on GO5E-050.01093543


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO1.266E-050.02911443
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.851E-050.02128154
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.096E-050.0160718
keratinocyte proliferationGO:0043616GO:0043616 on GO2.793E-050.01606199
positive regulation of cell growthGO:0030307GO:0030307 on GO6.568E-050.03021449
negative regulation of caspase activityGO:0043154GO:0043154 on GO9.045E-050.0346738
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO9.045E-050.0297204
positive regulation of cell sizeGO:0045793GO:0045793 on GO1.043E-040.02998787
negative regulation of cell cycle processGO:0010948GO:0010948 on GO1.043E-040.02665588
skin developmentGO:0043588GO:0043588 on GO1.043E-040.0239903
cellular response to unfolded proteinGO:0034620GO:0034620 on GO1.191E-040.02490978


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO1.266E-050.02911443
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.851E-050.02128154
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.096E-050.0160718
keratinocyte proliferationGO:0043616GO:0043616 on GO2.793E-050.01606199
positive regulation of cell growthGO:0030307GO:0030307 on GO6.568E-050.03021449
negative regulation of caspase activityGO:0043154GO:0043154 on GO9.045E-050.0346738
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO9.045E-050.0297204
positive regulation of cell sizeGO:0045793GO:0045793 on GO1.043E-040.02998787
negative regulation of cell cycle processGO:0010948GO:0010948 on GO1.043E-040.02665588
skin developmentGO:0043588GO:0043588 on GO1.043E-040.0239903
cellular response to unfolded proteinGO:0034620GO:0034620 on GO1.191E-040.02490978


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell growthGO:0030307GO:0030307 on GO1.771E-050.03263475
keratinocyte proliferationGO:0043616GO:0043616 on GO2.478E-050.02283104
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO3.302E-050.02028245
positive regulation of cell sizeGO:0045793GO:0045793 on GO4.242E-050.0195467
negative regulation of cell cycle processGO:0010948GO:0010948 on GO4.242E-050.01563736
negative regulation of caspase activityGO:0043154GO:0043154 on GO4.242E-050.01303113
apoptotic mitochondrial changesGO:0008637GO:0008637 on GO5.3E-050.01395381
skin developmentGO:0043588GO:0043588 on GO6.474E-050.01491414
negative regulation of peptidase activityGO:0010466GO:0010466 on GO7.764E-050.01589916
regulation of chromosome organizationGO:0033044GO:0033044 on GO7.764E-050.01430924
regulation of mitotic metaphase/anaphase transitionGO:0030071GO:0030071 on GO7.764E-050.0130084


Zhang file

NameAccession NumberLinkP-valCorrected P-val
positive regulation of cell cycleGO:0045787GO:0045787 on GO1.266E-050.02911443
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.851E-050.02128154
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.096E-050.0160718
keratinocyte proliferationGO:0043616GO:0043616 on GO2.793E-050.01606199
positive regulation of cell growthGO:0030307GO:0030307 on GO6.568E-050.03021449
negative regulation of caspase activityGO:0043154GO:0043154 on GO9.045E-050.0346738
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO9.045E-050.0297204
positive regulation of cell sizeGO:0045793GO:0045793 on GO1.043E-040.02998787
negative regulation of cell cycle processGO:0010948GO:0010948 on GO1.043E-040.02665588
skin developmentGO:0043588GO:0043588 on GO1.043E-040.0239903
cellular response to unfolded proteinGO:0034620GO:0034620 on GO1.191E-040.02490978


Zhou file

NameAccession NumberLinkP-valCorrected P-val
RNA export from nucleusGO:0006405GO:0006405 on GO1.338E-073.174E-04
nuclear exportGO:0051168GO:0051168 on GO5.154E-076.116E-04
nuclear importGO:0051170GO:0051170 on GO3.251E-062.572E-03
regulation of integrin biosynthetic processGO:0045113GO:0045113 on GO1.277E-057.574E-03
definitive hemopoiesisGO:0060216GO:0060216 on GO1.277E-056.059E-03
embryonic camera-type eye developmentGO:0031076GO:0031076 on GO1.914E-057.568E-03
response to pHGO:0009268GO:0009268 on GO1.914E-056.487E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.677E-057.941E-03
enucleate erythrocyte differentiationGO:0043353GO:0043353 on GO2.677E-057.059E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.048E-057.232E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO3.567E-057.695E-03


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