Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2629-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2579 | 8.813e-03 | 6.489e-03 | 7.881e-02 |
|---|
| IPC-NIBC-129 | 0.2608 | 1.988e-02 | 2.964e-02 | 2.315e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2560 | 4.719e-03 | 8.374e-03 | 1.768e-01 |
|---|
| Loi_GPL570 | 0.2250 | 8.315e-02 | 9.329e-02 | 3.229e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1544 | 1.000e-06 | 1.600e-05 | 2.000e-06 |
|---|
| Parker_GPL1390 | 0.2743 | 5.065e-02 | 6.289e-02 | 3.968e-01 |
|---|
| Parker_GPL887 | 0.0067 | 2.506e-01 | 2.676e-01 | 2.577e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3908 | 9.918e-01 | 9.896e-01 | 1.000e+00 |
|---|
| Schmidt | 0.2421 | 1.762e-01 | 2.228e-01 | 7.594e-01 |
|---|
| Sotiriou | 0.3186 | 1.091e-02 | 8.365e-03 | 1.980e-01 |
|---|
| Van-De-Vijver | 0.3236 | 1.008e-03 | 1.450e-03 | 5.900e-02 |
|---|
| Zhang | 0.1348 | 1.461e-01 | 9.793e-02 | 3.009e-01 |
|---|
| Zhou | 0.4199 | 5.010e-02 | 3.789e-02 | 3.153e-01 |
|---|
Expression data for subnetwork 2629-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2629-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| smn1 |   | 1 | 116 | 196 | 204 | -0.026 | 0.093 | 0.050 | 0.046 | 0.114 | 0.053 | undef | 0.062 | 0.035 | 0.130 | 0.067 | 0.111 | undef |
|---|
| ccnb2 | | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| rrm2 | | 5 | 40 | 163 | 143 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | undef | 0.129 | 0.302 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| snrpd1 | | 2 | 78 | 196 | 190 | -0.026 | 0.257 | 0.128 | 0.254 | 0.106 | 0.174 | 0.255 | 0.155 | 0.190 | 0.111 | 0.083 | 0.011 | 0.205 |
|---|
| luc7l3 | | 2 | 78 | 196 | 190 | 0.006 | 0.111 | -0.046 | -0.016 | 0.121 | 0.071 | -0.318 | -0.084 | 0.159 | 0.098 | -0.004 | 0.067 | 0.065 |
|---|
| ilf3 | | 1 | 116 | 196 | 204 | 0.069 | 0.235 | 0.115 | 0.194 | 0.073 | 0.201 | 0.067 | 0.145 | 0.055 | 0.030 | 0.115 | 0.013 | 0.265 |
|---|
| eif4g1 | | 2 | 78 | 196 | 190 | 0.123 | 0.262 | 0.043 | 0.013 | 0.098 | 0.189 | 0.016 | 0.194 | 0.076 | 0.147 | 0.208 | -0.028 | 0.268 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| gba | | 1 | 116 | 196 | 204 | 0.079 | 0.073 | -0.006 | -0.216 | 0.085 | -0.158 | undef | 0.101 | 0.063 | -0.026 | 0.110 | 0.038 | 0.148 |
|---|
| hspb1 | | 5 | 40 | 42 | 36 | 0.190 | -0.050 | 0.184 | 0.212 | 0.231 | -0.026 | -0.065 | 0.289 | -0.021 | 0.201 | 0.183 | -0.077 | 0.290 |
|---|
| snrpb | | 3 | 62 | 1 | 14 | 0.141 | 0.077 | 0.167 | 0.250 | 0.139 | 0.089 | 0.155 | 0.281 | 0.120 | 0.161 | 0.167 | 0.010 | 0.153 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sf3b3 | | 3 | 62 | 196 | 184 | 0.119 | 0.241 | 0.143 | -0.019 | 0.082 | 0.222 | 0.007 | 0.271 | 0.168 | 0.060 | 0.123 | -0.077 | 0.372 |
|---|
GO Enrichment output for subnetwork 2629-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 |  | 5.786E-08 | 1.331E-04 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.006E-07 | 1.157E-04 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.759E-07 | 1.348E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 6.571E-06 | 3.778E-03 |
|---|
| lysosome organization | GO:0007040 | | 7.6E-06 | 3.496E-03 |
|---|
| vacuole organization | GO:0007033 | | 9.964E-06 | 3.82E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.984E-05 | 6.52E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.938E-05 | 0.01707265 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.355E-05 | 0.01624155 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 6.365E-05 | 0.01463991 |
|---|
| regulation of translational initiation | GO:0006446 | | 6.812E-05 | 0.01424254 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 1.405E-08 | 3.433E-05 |
|---|
| lysosome organization | GO:0007040 | | 1.398E-06 | 1.707E-03 |
|---|
| vacuole organization | GO:0007033 | | 1.813E-06 | 1.476E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 4.689E-06 | 2.864E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.18E-05 | 5.766E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.711E-05 | 6.968E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.859E-05 | 6.49E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 1.918E-05 | 5.858E-03 |
|---|
| response to UV | GO:0009411 | | 2.028E-05 | 5.504E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.258E-05 | 5.517E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.478E-05 | 5.503E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.332E-08 | 5.61E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.586E-08 | 5.518E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.099E-07 | 8.814E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.995E-06 | 1.2E-03 |
|---|
| lysosome organization | GO:0007040 | | 1.995E-06 | 9.599E-04 |
|---|
| vacuole organization | GO:0007033 | | 2.618E-06 | 1.05E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.375E-06 | 2.191E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.805E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 2.337E-05 | 6.248E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 2.963E-05 | 7.128E-03 |
|---|
| response to UV | GO:0009411 | | 2.963E-05 | 6.48E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 1.405E-08 | 3.433E-05 |
|---|
| lysosome organization | GO:0007040 | | 1.398E-06 | 1.707E-03 |
|---|
| vacuole organization | GO:0007033 | | 1.813E-06 | 1.476E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 4.689E-06 | 2.864E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.18E-05 | 5.766E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.711E-05 | 6.968E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.859E-05 | 6.49E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 1.918E-05 | 5.858E-03 |
|---|
| response to UV | GO:0009411 | | 2.028E-05 | 5.504E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.258E-05 | 5.517E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.478E-05 | 5.503E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.332E-08 | 5.61E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.586E-08 | 5.518E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.099E-07 | 8.814E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.995E-06 | 1.2E-03 |
|---|
| lysosome organization | GO:0007040 | | 1.995E-06 | 9.599E-04 |
|---|
| vacuole organization | GO:0007033 | | 2.618E-06 | 1.05E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.375E-06 | 2.191E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.805E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 2.337E-05 | 6.248E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 2.963E-05 | 7.128E-03 |
|---|
| response to UV | GO:0009411 | | 2.963E-05 | 6.48E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 4.561E-09 | 1.629E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.997E-08 | 5.352E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 8.818E-08 | 1.05E-04 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 1.935E-06 | 1.727E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 5.61E-06 | 4.007E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.969E-06 | 4.743E-03 |
|---|
| response to UV | GO:0009411 | | 9.657E-06 | 4.927E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.027E-05 | 4.584E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.076E-05 | 4.269E-03 |
|---|
| oxidoreductase activity. acting on CH or CH2 groups | GO:0016725 | | 1.505E-05 | 5.376E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.505E-05 | 4.887E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| small nuclear ribonucleoprotein complex | GO:0030532 | | 4.889E-09 | 1.784E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.474E-08 | 6.336E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.25E-07 | 2.736E-04 |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 1.795E-06 | 1.637E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 5.145E-06 | 3.754E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.506E-06 | 4.564E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 7.75E-06 | 4.039E-03 |
|---|
| response to UV | GO:0009411 | | 8.621E-06 | 3.931E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.162E-05 | 4.709E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.162E-05 | 4.238E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.261E-05 | 4.182E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 2.332E-08 | 5.61E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.586E-08 | 5.518E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.099E-07 | 8.814E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.995E-06 | 1.2E-03 |
|---|
| lysosome organization | GO:0007040 | | 1.995E-06 | 9.599E-04 |
|---|
| vacuole organization | GO:0007033 | | 2.618E-06 | 1.05E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 6.375E-06 | 2.191E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.805E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 2.337E-05 | 6.248E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 2.963E-05 | 7.128E-03 |
|---|
| response to UV | GO:0009411 | | 2.963E-05 | 6.48E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 5.786E-08 | 1.331E-04 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.006E-07 | 1.157E-04 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.759E-07 | 1.348E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 6.571E-06 | 3.778E-03 |
|---|
| lysosome organization | GO:0007040 | | 7.6E-06 | 3.496E-03 |
|---|
| vacuole organization | GO:0007033 | | 9.964E-06 | 3.82E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.984E-05 | 6.52E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.938E-05 | 0.01707265 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.355E-05 | 0.01624155 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 6.365E-05 | 0.01463991 |
|---|
| regulation of translational initiation | GO:0006446 | | 6.812E-05 | 0.01424254 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 5.786E-08 | 1.331E-04 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.006E-07 | 1.157E-04 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.759E-07 | 1.348E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 6.571E-06 | 3.778E-03 |
|---|
| lysosome organization | GO:0007040 | | 7.6E-06 | 3.496E-03 |
|---|
| vacuole organization | GO:0007033 | | 9.964E-06 | 3.82E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.984E-05 | 6.52E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.938E-05 | 0.01707265 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.355E-05 | 0.01624155 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 6.365E-05 | 0.01463991 |
|---|
| regulation of translational initiation | GO:0006446 | | 6.812E-05 | 0.01424254 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 1.378E-08 | 2.539E-05 |
|---|
| spliceosome assembly | GO:0000245 | | 6.875E-06 | 6.335E-03 |
|---|
| regulation of translational initiation | GO:0006446 | | 2.298E-05 | 0.01411882 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 2.298E-05 | 0.01058911 |
|---|
| thymus development | GO:0048538 | | 4.923E-05 | 0.01814698 |
|---|
| T cell homeostasis | GO:0043029 | | 9.17E-05 | 0.02816848 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.471E-04 | 0.03872083 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.541E-04 | 0.05853899 |
|---|
| regulation of translation | GO:0006417 | | 2.57E-04 | 0.05262414 |
|---|
| lysosome organization | GO:0007040 | | 2.961E-04 | 0.05457815 |
|---|
| leukocyte homeostasis | GO:0001776 | | 3.413E-04 | 0.05718879 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 5.786E-08 | 1.331E-04 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.006E-07 | 1.157E-04 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.759E-07 | 1.348E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 6.571E-06 | 3.778E-03 |
|---|
| lysosome organization | GO:0007040 | | 7.6E-06 | 3.496E-03 |
|---|
| vacuole organization | GO:0007033 | | 9.964E-06 | 3.82E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.984E-05 | 6.52E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.938E-05 | 0.01707265 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.355E-05 | 0.01624155 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 6.365E-05 | 0.01463991 |
|---|
| regulation of translational initiation | GO:0006446 | | 6.812E-05 | 0.01424254 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosomal snRNP biogenesis | GO:0000387 | | 8.265E-08 | 1.961E-04 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.195E-07 | 1.418E-04 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.91E-07 | 1.511E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 5.176E-06 | 3.071E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.349E-05 | 0.02064035 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.914E-05 | 0.01943464 |
|---|
| regulation of translational initiation | GO:0006446 | | 4.974E-05 | 0.01686262 |
|---|
| response to UV | GO:0009411 | | 5.308E-05 | 0.01574418 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 6.546E-05 | 0.01725845 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.62E-05 | 0.01808181 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 1.05E-04 | 0.02264966 |
|---|
