Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 26000-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1748 | 1.876e-02 | 1.527e-02 | 1.423e-01 |
|---|
| IPC-NIBC-129 | 0.2711 | 6.488e-02 | 9.223e-02 | 5.204e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2192 | 6.053e-03 | 1.052e-02 | 2.049e-01 |
|---|
| Loi_GPL570 | 0.2128 | 9.848e-02 | 1.099e-01 | 3.651e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1630 | 1.000e-06 | 8.000e-06 | 1.000e-06 |
|---|
| Parker_GPL1390 | 0.2629 | 7.808e-02 | 9.493e-02 | 4.975e-01 |
|---|
| Parker_GPL887 | 0.0328 | 4.191e-01 | 4.382e-01 | 4.652e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3435 | 8.915e-01 | 8.660e-01 | 9.998e-01 |
|---|
| Schmidt | 0.2117 | 1.601e-02 | 1.823e-02 | 2.007e-01 |
|---|
| Sotiriou | 0.2691 | 2.472e-02 | 1.945e-02 | 3.095e-01 |
|---|
| Van-De-Vijver | 0.2378 | 6.970e-04 | 1.003e-03 | 4.598e-02 |
|---|
| Zhang | 0.2842 | 1.283e-01 | 8.321e-02 | 2.705e-01 |
|---|
| Zhou | 0.4405 | 7.723e-02 | 6.664e-02 | 4.362e-01 |
|---|
Expression data for subnetwork 26000-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 26000-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| rps6kb1 | | 5 | 40 | 216 | 200 | -0.048 | 0.004 | 0.033 | 0.144 | 0.128 | 0.095 | -0.319 | 0.022 | 0.116 | 0.084 | 0.068 | 0.076 | 0.280 |
|---|
| eif4ebp1 | | 4 | 50 | 260 | 239 | 0.158 | 0.203 | 0.132 | 0.139 | 0.104 | 0.122 | 0.119 | 0.252 | 0.031 | 0.042 | 0.188 | 0.029 | 0.219 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| ppp2ca | | 1 | 116 | 281 | 282 | -0.072 | -0.030 | 0.122 | 0.156 | 0.117 | 0.037 | -0.186 | 0.103 | -0.017 | 0.058 | -0.141 | -0.023 | 0.285 |
|---|
| cks2 | | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| tbc1d10b | | 1 | 116 | 281 | 282 | 0.035 | 0.085 | 0.077 | -0.002 | 0.067 | 0.009 | 0.070 | 0.076 | -0.055 | 0.051 | 0.105 | -0.029 | 0.303 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 26000-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.948E-09 | 4.48E-06 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.376E-06 | 7.332E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.117E-05 | 8.563E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 7.514E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.674E-05 | 7.702E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 8.98E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.343E-05 | 7.697E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.069E-05 | 8.822E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 7.977E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.234E-05 | 7.438E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.764E-05 | 7.87E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.712E-06 | 2.091E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 2.5E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 3.653E-06 | 2.231E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 7.665E-06 | 3.745E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 4.16E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.022E-05 | 3.566E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.05E-05 | 3.207E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.097E-05 | 2.977E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.297E-05 | 3.167E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.005E-05 | 4.452E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.055E-06 | 2.473E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 3.489E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 4.625E-06 | 2.782E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 9.704E-06 | 4.67E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.293E-05 | 4.445E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.36E-05 | 4.09E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.422E-05 | 3.802E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 3.999E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.689E-05 | 3.695E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.712E-06 | 2.091E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 2.5E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 3.653E-06 | 2.231E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 7.665E-06 | 3.745E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 4.16E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.022E-05 | 3.566E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.05E-05 | 3.207E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.097E-05 | 2.977E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.297E-05 | 3.167E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.005E-05 | 4.452E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.055E-06 | 2.473E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 3.489E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 4.625E-06 | 2.782E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 9.704E-06 | 4.67E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.293E-05 | 4.445E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.36E-05 | 4.09E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.422E-05 | 3.802E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 3.999E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.689E-05 | 3.695E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 3.255E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 6.614E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 7.935E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 1.262E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.105E-06 | 7.893E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 2.003E-03 |
|---|
| eukaryotic initiation factor 4E binding | GO:0008190 | | 4.142E-06 | 2.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 2.772E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 6.21E-06 | 2.464E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 7.937E-06 | 2.834E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.338E-06 | 2.707E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.578E-11 | 3.494E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 1.245E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 8.872E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 1.105E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.086E-06 | 7.925E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.448E-06 | 1.488E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 1.961E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 2.573E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 5.642E-06 | 2.287E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 5.642E-06 | 2.058E-03 |
|---|
| translation initiation factor binding | GO:0031369 | | 5.642E-06 | 1.871E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.034E-10 | 9.705E-07 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.055E-06 | 2.473E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 3.489E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 4.625E-06 | 2.782E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 9.704E-06 | 4.67E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.293E-05 | 4.445E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.36E-05 | 4.09E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.422E-05 | 3.802E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 3.999E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.689E-05 | 3.695E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.376E-06 | 7.332E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.117E-05 | 8.563E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 7.514E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.674E-05 | 7.702E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 8.98E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.343E-05 | 7.697E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.069E-05 | 8.822E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 7.977E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.234E-05 | 7.438E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.764E-05 | 7.87E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.376E-06 | 7.332E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.117E-05 | 8.563E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 7.514E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.674E-05 | 7.702E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 8.98E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.343E-05 | 7.697E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.069E-05 | 8.822E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 7.977E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.234E-05 | 7.438E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.764E-05 | 7.87E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.355E-06 | 4.34E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.923E-06 | 9.144E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.177E-05 | 7.228E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.277E-05 | 5.882E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.493E-05 | 5.503E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.518E-05 | 4.663E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.276E-05 | 5.992E-03 |
|---|
| negative regulation of protein amino acid phosphorylation | GO:0001933 | | 2.276E-05 | 5.243E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.276E-05 | 4.66E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.184E-05 | 5.868E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.376E-06 | 7.332E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.117E-05 | 8.563E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 7.514E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.674E-05 | 7.702E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 8.98E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.343E-05 | 7.697E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.069E-05 | 8.822E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.121E-05 | 7.977E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.234E-05 | 7.438E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.764E-05 | 7.87E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.818E-09 | 6.687E-06 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 6.876E-06 | 8.158E-03 |
|---|
| negative regulation of tyrosine phosphorylation of Stat3 protein | GO:0042518 | | 1.166E-05 | 9.221E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.511E-05 | 8.963E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.747E-05 | 8.293E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.445E-05 | 9.669E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.445E-05 | 8.288E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 3.258E-05 | 9.663E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.258E-05 | 8.589E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.259E-05 | 0.01010692 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.469E-05 | 9.641E-03 |
|---|
