Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2597-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2124 | 8.753e-03 | 6.439e-03 | 7.838e-02 |
|---|
| IPC-NIBC-129 | 0.2611 | 2.190e-02 | 3.254e-02 | 2.495e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2563 | 1.581e-02 | 2.527e-02 | 3.475e-01 |
|---|
| Loi_GPL570 | 0.2097 | 1.027e-01 | 1.146e-01 | 3.763e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1771 | 1.000e-06 | 1.500e-05 | 2.000e-06 |
|---|
| Parker_GPL1390 | 0.2186 | 7.711e-02 | 9.381e-02 | 4.944e-01 |
|---|
| Parker_GPL887 | 0.1602 | 3.332e-01 | 3.517e-01 | 3.594e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3628 | 3.081e-01 | 2.384e-01 | 8.736e-01 |
|---|
| Schmidt | 0.2125 | 2.003e-02 | 2.318e-02 | 2.341e-01 |
|---|
| Sotiriou | 0.3005 | 1.473e-02 | 1.140e-02 | 2.343e-01 |
|---|
| Van-De-Vijver | 0.3167 | 5.110e-04 | 7.360e-04 | 3.717e-02 |
|---|
| Zhang | 0.2706 | 1.037e-01 | 6.367e-02 | 2.264e-01 |
|---|
| Zhou | 0.4578 | 6.482e-02 | 5.310e-02 | 3.843e-01 |
|---|
Expression data for subnetwork 2597-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2597-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| tsc1 |   | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| ccnb2 | | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| tk1 | | 7 | 30 | 84 | 67 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.105 | -0.100 | 0.257 | 0.204 | 0.142 | 0.293 | 0.164 | 0.222 |
|---|
| gapdh | | 6 | 35 | 18 | 20 | 0.071 | 0.312 | 0.102 | 0.145 | 0.165 | 0.172 | -0.253 | 0.288 | 0.064 | 0.213 | 0.225 | -0.088 | 0.235 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| lama4 | | 6 | 35 | 84 | 73 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.028 | 0.057 | 0.089 |
|---|
GO Enrichment output for subnetwork 2597-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 8.885E-06 | 0.0204359 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 0.01021795 |
|---|
| glycolysis | GO:0006096 | | 9.869E-06 | 7.566E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.837E-05 | 0.01056428 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 8.573E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 7.144E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 8.16E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.484E-05 | 7.14E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.655E-05 | 6.784E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.788E-05 | 6.412E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 3.068E-05 | 6.414E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.028E-06 | 9.841E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 5.331E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 5.328E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.323E-06 | 4.473E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 5.963E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 4.969E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.317E-05 | 4.596E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.317E-05 | 4.022E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.376E-05 | 3.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.564E-05 | 3.822E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.564E-05 | 3.474E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 3.491E-06 | 8.399E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 5.034E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 3.356E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 6.427E-06 | 3.866E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.168E-05 | 5.618E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.17E-05 | 4.022E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 3.672E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.276E-05 | 3.411E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.45E-05 | 3.49E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.45E-05 | 3.173E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.028E-06 | 9.841E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 5.331E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 5.328E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.323E-06 | 4.473E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 5.963E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 4.969E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.317E-05 | 4.596E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.317E-05 | 4.022E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.376E-05 | 3.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.564E-05 | 3.822E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.564E-05 | 3.474E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 3.491E-06 | 8.399E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 5.034E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 3.356E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 6.427E-06 | 3.866E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.168E-05 | 5.618E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.17E-05 | 4.022E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 3.672E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.276E-05 | 3.411E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.45E-05 | 3.49E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.45E-05 | 3.173E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.578E-06 | 9.205E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.865E-06 | 6.902E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 5.41E-06 | 6.44E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.41E-06 | 4.83E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 5.41E-06 | 3.864E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 7.212E-06 | 4.292E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 7.212E-06 | 3.679E-03 |
|---|
| regulation of cell adhesion | GO:0030155 | | 7.842E-06 | 3.5E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.119E-06 | 3.618E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.269E-06 | 3.31E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 1.158E-05 | 3.76E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 2.566E-06 | 9.361E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.566E-06 | 4.681E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.848E-06 | 4.679E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.848E-06 | 3.509E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.848E-06 | 2.808E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.083E-06 | 2.483E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 4.712E-06 | 2.456E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.165E-06 | 2.355E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 5.386E-06 | 2.183E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.402E-06 | 1.971E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 5.897E-06 | 1.956E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 3.491E-06 | 8.399E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 5.034E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 3.356E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 6.427E-06 | 3.866E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.168E-05 | 5.618E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.17E-05 | 4.022E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 3.672E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.276E-05 | 3.411E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.45E-05 | 3.49E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.45E-05 | 3.173E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.0204359 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 0.01021795 |
|---|
| glycolysis | GO:0006096 | | 9.869E-06 | 7.566E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.837E-05 | 0.01056428 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 8.573E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 7.144E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 8.16E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.484E-05 | 7.14E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.655E-05 | 6.784E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.788E-05 | 6.412E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 3.068E-05 | 6.414E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.0204359 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 0.01021795 |
|---|
| glycolysis | GO:0006096 | | 9.869E-06 | 7.566E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.837E-05 | 0.01056428 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 8.573E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 7.144E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 8.16E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.484E-05 | 7.14E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.655E-05 | 6.784E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.788E-05 | 6.412E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 3.068E-05 | 6.414E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.329E-05 | 0.02448556 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.329E-05 | 0.01224278 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.329E-05 | 8.162E-03 |
|---|
| thymus development | GO:0048538 | | 1.329E-05 | 6.121E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 1.329E-05 | 4.897E-03 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.654E-05 | 5.082E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.859E-05 | 4.895E-03 |
|---|
| vascular endothelial growth factor receptor signaling pathway | GO:0048010 | | 1.859E-05 | 4.283E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.478E-05 | 5.074E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 2.478E-05 | 4.566E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 3.184E-05 | 5.335E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.0204359 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 0.01021795 |
|---|
| glycolysis | GO:0006096 | | 9.869E-06 | 7.566E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 1.837E-05 | 0.01056428 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 8.573E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 7.144E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 8.16E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.484E-05 | 7.14E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.655E-05 | 6.784E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.788E-05 | 6.412E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 3.068E-05 | 6.414E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 1.226E-07 | 2.91E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 2.804E-07 | 3.327E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 5.24E-07 | 4.145E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 7.702E-07 | 4.569E-04 |
|---|
| alcohol catabolic process | GO:0046164 | | 1.202E-06 | 5.705E-04 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 2.201E-06 | 8.704E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.632E-06 | 2.926E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.294E-05 | 3.839E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.811E-05 | 4.774E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.413E-05 | 5.726E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 3.101E-05 | 6.689E-03 |
|---|
