Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 23099-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1426 | 1.906e-02 | 1.554e-02 | 1.440e-01 |
|---|
| IPC-NIBC-129 | 0.2349 | 6.263e-02 | 8.918e-02 | 5.099e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2184 | 1.852e-02 | 2.919e-02 | 3.764e-01 |
|---|
| Loi_GPL570 | 0.2128 | 9.852e-02 | 1.100e-01 | 3.652e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1786 | 8.000e-06 | 7.600e-05 | 4.700e-05 |
|---|
| Parker_GPL1390 | 0.2113 | 5.378e-02 | 6.658e-02 | 4.098e-01 |
|---|
| Parker_GPL887 | 0.0295 | 5.070e-01 | 5.257e-01 | 5.712e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3054 | 9.072e-01 | 8.849e-01 | 9.999e-01 |
|---|
| Schmidt | 0.2379 | 1.591e-02 | 1.811e-02 | 1.998e-01 |
|---|
| Sotiriou | 0.2111 | 6.327e-02 | 5.148e-02 | 4.899e-01 |
|---|
| Van-De-Vijver | 0.2404 | 1.526e-03 | 2.196e-03 | 7.764e-02 |
|---|
| Zhang | 0.2846 | 1.013e-01 | 6.179e-02 | 2.219e-01 |
|---|
| Zhou | 0.3967 | 1.090e-01 | 1.035e-01 | 5.480e-01 |
|---|
Expression data for subnetwork 23099-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 23099-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| pcna | | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| fen1 | | 9 | 22 | 133 | 112 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.242 | 0.056 | 0.114 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cks2 | | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| mcm10 | | 1 | 116 | 305 | 305 | 0.078 | 0.243 | 0.143 | 0.087 | 0.099 | 0.035 | 0.265 | 0.118 | 0.179 | -0.071 | undef | 0.053 | 0.137 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| zbtb43 | | 1 | 116 | 305 | 305 | 0.065 | -0.102 | 0.015 | 0.018 | 0.080 | 0.018 | 0.195 | -0.235 | 0.196 | 0.111 | 0.048 | 0.010 | 0.129 |
|---|
GO Enrichment output for subnetwork 23099-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.074E-10 | 1.167E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 3.79E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 4.737E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 4.363E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 6.622E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.918E-05 | 7.354E-03 |
|---|
| UV protection | GO:0009650 | | 3.08E-05 | 0.01012002 |
|---|
| positive regulation of cell growth | GO:0030307 | | 4.513E-05 | 0.01297448 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.011E-05 | 0.01280622 |
|---|
| interphase | GO:0051325 | | 5.368E-05 | 0.0123458 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.216E-05 | 0.01299733 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.471E-11 | 1.825E-07 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.47E-08 | 6.681E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| response to UV | GO:0009411 | | 2.814E-06 | 1.719E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 3.308E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 5.41E-03 |
|---|
| UV protection | GO:0009650 | | 1.329E-05 | 4.637E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.609E-05 | 4.914E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.883E-05 | 5.111E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.196E-05 | 5.365E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.196E-05 | 4.878E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.234E-10 | 2.968E-07 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 8.236E-08 | 9.908E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.791E-03 |
|---|
| response to UV | GO:0009411 | | 3.439E-06 | 2.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.38E-06 | 4.033E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.077E-05 | 4.319E-03 |
|---|
| UV protection | GO:0009650 | | 1.644E-05 | 5.652E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.973E-05 | 5.933E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.002E-05 | 5.353E-03 |
|---|
| interphase | GO:0051325 | | 2.198E-05 | 5.288E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.718E-05 | 5.945E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.471E-11 | 1.825E-07 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.47E-08 | 6.681E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| response to UV | GO:0009411 | | 2.814E-06 | 1.719E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 3.308E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 5.41E-03 |
|---|
| UV protection | GO:0009650 | | 1.329E-05 | 4.637E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.609E-05 | 4.914E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.883E-05 | 5.111E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.196E-05 | 5.365E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.196E-05 | 4.878E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.234E-10 | 2.968E-07 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 8.236E-08 | 9.908E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.791E-03 |
|---|
| response to UV | GO:0009411 | | 3.439E-06 | 2.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.38E-06 | 4.033E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.077E-05 | 4.319E-03 |
|---|
| UV protection | GO:0009650 | | 1.644E-05 | 5.652E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.973E-05 | 5.933E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.002E-05 | 5.353E-03 |
|---|
| interphase | GO:0051325 | | 2.198E-05 | 5.288E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.718E-05 | 5.945E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.036E-11 | 7.271E-08 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 5.876E-09 | 1.049E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.73E-08 | 2.059E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.236E-08 | 1.997E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.268E-08 | 3.048E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 4.75E-08 | 2.827E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.578E-06 | 8.048E-04 |
|---|
| response to UV | GO:0009411 | | 1.913E-06 | 8.54E-04 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 2.578E-06 | 1.023E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 2.578E-06 | 9.205E-04 |
|---|
| ribonuclease H activity | GO:0004523 | | 2.578E-06 | 8.368E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.533E-11 | 5.593E-08 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.298E-09 | 7.839E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.752E-08 | 2.13E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.79E-08 | 2.544E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.792E-08 | 2.037E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 3.112E-08 | 1.892E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.392E-07 | 4.895E-04 |
|---|
| response to UV | GO:0009411 | | 1.079E-06 | 4.922E-04 |
|---|
| ribonuclease H activity | GO:0004523 | | 2.053E-06 | 8.322E-04 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 2.053E-06 | 7.49E-04 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 2.053E-06 | 6.809E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.234E-10 | 2.968E-07 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 8.236E-08 | 9.908E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.791E-03 |
|---|
| response to UV | GO:0009411 | | 3.439E-06 | 2.068E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.38E-06 | 4.033E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.077E-05 | 4.319E-03 |
|---|
| UV protection | GO:0009650 | | 1.644E-05 | 5.652E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.973E-05 | 5.933E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.002E-05 | 5.353E-03 |
|---|
| interphase | GO:0051325 | | 2.198E-05 | 5.288E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.718E-05 | 5.945E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 3.79E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 4.737E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 4.363E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 6.622E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.918E-05 | 7.354E-03 |
|---|
| UV protection | GO:0009650 | | 3.08E-05 | 0.01012002 |
|---|
| positive regulation of cell growth | GO:0030307 | | 4.513E-05 | 0.01297448 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.011E-05 | 0.01280622 |
|---|
| interphase | GO:0051325 | | 5.368E-05 | 0.0123458 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.216E-05 | 0.01299733 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 3.79E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 4.737E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 4.363E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 6.622E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.918E-05 | 7.354E-03 |
|---|
| UV protection | GO:0009650 | | 3.08E-05 | 0.01012002 |
|---|
| positive regulation of cell growth | GO:0030307 | | 4.513E-05 | 0.01297448 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.011E-05 | 0.01280622 |
|---|
| interphase | GO:0051325 | | 5.368E-05 | 0.0123458 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.216E-05 | 0.01299733 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.373E-08 | 4.374E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.388E-06 | 2.2E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 9.493E-06 | 5.832E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 6.121E-03 |
|---|
| UV protection | GO:0009650 | | 1.329E-05 | 4.897E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.771E-05 | 5.439E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 2.276E-05 | 5.992E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.276E-05 | 5.243E-03 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 2.844E-05 | 5.823E-03 |
|---|
| skin development | GO:0043588 | | 3.474E-05 | 6.403E-03 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.167E-05 | 6.982E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 3.79E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 4.737E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 4.363E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 6.622E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.918E-05 | 7.354E-03 |
|---|
| UV protection | GO:0009650 | | 3.08E-05 | 0.01012002 |
|---|
| positive regulation of cell growth | GO:0030307 | | 4.513E-05 | 0.01297448 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.011E-05 | 0.01280622 |
|---|
| interphase | GO:0051325 | | 5.368E-05 | 0.0123458 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.216E-05 | 0.01299733 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.689E-10 | 1.587E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.512E-07 | 5.354E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.723E-06 | 5.318E-03 |
|---|
| response to UV | GO:0009411 | | 8.218E-06 | 4.875E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.441E-05 | 6.837E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.92E-05 | 7.593E-03 |
|---|
| UV protection | GO:0009650 | | 3.082E-05 | 0.01044897 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.26E-05 | 0.01560175 |
|---|
| interphase | GO:0051325 | | 5.629E-05 | 0.01484285 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.221E-05 | 0.01476137 |
|---|
| skin development | GO:0043588 | | 7.174E-05 | 0.01547617 |
|---|
