Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2305-2-real
score
Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
Desmedt | 0.1644 | 1.903e-02 | 1.552e-02 | 1.438e-01 |
IPC-NIBC-129 | 0.2651 | 5.842e-02 | 8.348e-02 | 4.895e-01 |
Ivshina_GPL96-GPL97 | 0.2185 | 1.616e-02 | 2.578e-02 | 3.514e-01 |
Loi_GPL570 | 0.2019 | 1.144e-01 | 1.271e-01 | 4.057e-01 |
Loi_GPL96-GPL97 | 0.1757 | 1.000e-06 | 1.200e-05 | 1.000e-06 |
Parker_GPL1390 | 0.2176 | 6.074e-02 | 7.476e-02 | 4.373e-01 |
Parker_GPL887 | 0.0315 | 4.460e-01 | 4.651e-01 | 4.980e-01 |
Pawitan_GPL96-GPL97 | 0.3574 | 8.979e-01 | 8.737e-01 | 9.999e-01 |
Schmidt | 0.2294 | 1.797e-02 | 2.064e-02 | 2.174e-01 |
Sotiriou | 0.2901 | 1.751e-02 | 1.362e-02 | 2.575e-01 |
Van-De-Vijver | 0.2455 | 8.250e-04 | 1.187e-03 | 5.157e-02 |
Zhang | 0.2772 | 1.060e-01 | 6.540e-02 | 2.305e-01 |
Zhou | 0.4311 | 6.807e-02 | 5.659e-02 | 3.985e-01 |
Expression data for subnetwork 2305-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt

Score for each gene in subnetwork 2305-2-real in each dataset
Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
cdkn3 |  | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
cdkn1a |  | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
tle1 |  | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
ccnb1 |  | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
ccnd1 |  | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
cks2 |  | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
foxm1 |  | 1 | 116 | 288 | 289 | 0.059 | 0.185 | 0.091 | 0.181 | 0.128 | 0.100 | -0.062 | 0.231 | 0.223 | 0.140 | undef | 0.176 | -0.236 |
tsc1 |  | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
cdc2 |  | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
sfn |  | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
GO Enrichment output for subnetwork 2305-2-real in each dataset
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.561E-12 | 8.191E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.072E-08 | 1.233E-05 |
interphase | GO:0051325 |  | 1.205E-08 | 9.235E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 8.282E-07 | 3.81E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 2.333E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.576E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.254E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 2.382E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.645E-05 | 3.783E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.645E-05 | 3.439E-03 |
IPC-NIBC-129 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 4.938E-13 | 1.206E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 2.156E-09 | 2.633E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.171E-08 | 9.537E-06 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 3.476E-07 | 2.123E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.129E-06 | 1.04E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.005E-06 | 1.223E-03 |
response to UV | GO:0009411 |  | 3.923E-06 | 1.369E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 4.506E-06 | 1.376E-03 |
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 |  | 7.458E-06 | 2.025E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 7.795E-06 | 1.904E-03 |
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 |  | 7.795E-06 | 1.731E-03 |
Ivshina_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 9.327E-13 | 2.244E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 3.152E-09 | 3.792E-06 |
interphase | GO:0051325 |  | 3.69E-09 | 2.96E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.815E-08 | 1.092E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 4.853E-07 | 2.335E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.97E-06 | 1.191E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.766E-06 | 1.295E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 3.766E-06 | 1.133E-03 |
response to UV | GO:0009411 |  | 4.888E-06 | 1.307E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 9.94E-06 | 2.392E-03 |
negative regulation of kinase activity | GO:0033673 |  | 1.039E-05 | 2.274E-03 |
Loi_GPL570 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 4.938E-13 | 1.206E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 2.156E-09 | 2.633E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.171E-08 | 9.537E-06 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 3.476E-07 | 2.123E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.129E-06 | 1.04E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.005E-06 | 1.223E-03 |
response to UV | GO:0009411 |  | 3.923E-06 | 1.369E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 4.506E-06 | 1.376E-03 |
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 |  | 7.458E-06 | 2.025E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 7.795E-06 | 1.904E-03 |
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 |  | 7.795E-06 | 1.731E-03 |
Loi_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 9.327E-13 | 2.244E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 3.152E-09 | 3.792E-06 |
interphase | GO:0051325 |  | 3.69E-09 | 2.96E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.815E-08 | 1.092E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 4.853E-07 | 2.335E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.97E-06 | 1.191E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.766E-06 | 1.295E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 3.766E-06 | 1.133E-03 |
response to UV | GO:0009411 |  | 4.888E-06 | 1.307E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 9.94E-06 | 2.392E-03 |
negative regulation of kinase activity | GO:0033673 |  | 1.039E-05 | 2.274E-03 |
Parker_GPL1390 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 9.331E-14 | 3.332E-10 |
cyclin-dependent protein kinase regulator activity | GO:0016538 |  | 2.114E-11 | 3.775E-08 |
protein kinase regulator activity | GO:0019887 |  | 1.639E-10 | 1.951E-07 |
kinase regulator activity | GO:0019207 |  | 4.235E-10 | 3.781E-07 |
interphase of mitotic cell cycle | GO:0051329 |  | 5.842E-10 | 4.173E-07 |
cyclin-dependent protein kinase holoenzyme complex | GO:0000307 |  | 8.812E-09 | 5.245E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.036E-08 | 5.283E-06 |
protein serine/threonine kinase inhibitor activity | GO:0030291 |  | 5.717E-08 | 2.552E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 1.067E-07 | 4.234E-05 |
protein kinase inhibitor activity | GO:0004860 |  | 5.124E-07 | 1.83E-04 |
kinase inhibitor activity | GO:0019210 |  | 6.346E-07 | 2.06E-04 |
Parker_GPL887 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.28E-14 | 2.291E-10 |
cyclin-dependent protein kinase regulator activity | GO:0016538 |  | 4.099E-11 | 7.476E-08 |
protein kinase regulator activity | GO:0019887 |  | 1.16E-10 | 1.411E-07 |
kinase regulator activity | GO:0019207 |  | 2.393E-10 | 2.183E-07 |
interphase of mitotic cell cycle | GO:0051329 |  | 3.315E-10 | 2.419E-07 |
interphase | GO:0051325 |  | 3.755E-10 | 2.283E-07 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.016E-09 | 2.614E-06 |
cyclin-dependent protein kinase holoenzyme complex | GO:0000307 |  | 6.139E-09 | 2.799E-06 |
protein serine/threonine kinase inhibitor activity | GO:0030291 |  | 6.125E-08 | 2.483E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 6.125E-08 | 2.234E-05 |
protein kinase inhibitor activity | GO:0004860 |  | 6.512E-07 | 2.16E-04 |
Pawitan_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 9.327E-13 | 2.244E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 3.152E-09 | 3.792E-06 |
interphase | GO:0051325 |  | 3.69E-09 | 2.96E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.815E-08 | 1.092E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 4.853E-07 | 2.335E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.97E-06 | 1.191E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.766E-06 | 1.295E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 3.766E-06 | 1.133E-03 |
response to UV | GO:0009411 |  | 4.888E-06 | 1.307E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 9.94E-06 | 2.392E-03 |
negative regulation of kinase activity | GO:0033673 |  | 1.039E-05 | 2.274E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.561E-12 | 8.191E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.072E-08 | 1.233E-05 |
interphase | GO:0051325 |  | 1.205E-08 | 9.235E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 8.282E-07 | 3.81E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 2.333E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.576E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.254E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 2.382E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.645E-05 | 3.783E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.645E-05 | 3.439E-03 |
Sotiriou file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.561E-12 | 8.191E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.072E-08 | 1.233E-05 |
interphase | GO:0051325 |  | 1.205E-08 | 9.235E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 8.282E-07 | 3.81E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 2.333E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.576E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.254E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 2.382E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.645E-05 | 3.783E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.645E-05 | 3.439E-03 |
Van-De-Vijver file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.198E-06 | 2.208E-03 |
positive regulation of cell growth | GO:0030307 |  | 6.331E-06 | 5.834E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 6.331E-06 | 3.89E-03 |
regulation of Rho GTPase activity | GO:0032319 |  | 6.331E-06 | 2.917E-03 |
positive regulation of Ras GTPase activity | GO:0032320 |  | 6.331E-06 | 2.334E-03 |
positive regulation of GTPase activity | GO:0043547 |  | 8.861E-06 | 2.722E-03 |
keratinocyte proliferation | GO:0043616 |  | 8.861E-06 | 2.333E-03 |
negative regulation of signal transduction | GO:0009968 |  | 1.038E-05 | 2.391E-03 |
regulation of stress fiber formation | GO:0051492 |  | 1.181E-05 | 2.419E-03 |
release of cytochrome c from mitochondria | GO:0001836 |  | 1.181E-05 | 2.177E-03 |
negative regulation of cell communication | GO:0010648 |  | 1.275E-05 | 2.137E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.561E-12 | 8.191E-09 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.072E-08 | 1.233E-05 |
interphase | GO:0051325 |  | 1.205E-08 | 9.235E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 8.282E-07 | 3.81E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 2.333E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.576E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 2.254E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 2.382E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.645E-05 | 3.783E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.645E-05 | 3.439E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.064E-12 | 1.676E-08 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.58E-08 | 1.875E-05 |
interphase | GO:0051325 |  | 1.773E-08 | 1.402E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 7.882E-08 | 4.676E-05 |
G2/M transition of mitotic cell cycle | GO:0000086 |  | 9.725E-07 | 4.616E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 8.289E-06 | 3.278E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 8.632E-06 | 2.926E-03 |
response to UV | GO:0009411 |  | 1.167E-05 | 3.462E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.294E-05 | 3.412E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.811E-05 | 4.297E-03 |
negative regulation of cyclin-dependent protein kinase activity | GO:0045736 |  | 2.413E-05 | 5.205E-03 |