Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2305-2-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.16441.903e-021.552e-021.438e-01
IPC-NIBC-1290.26515.842e-028.348e-024.895e-01
Ivshina_GPL96-GPL970.21851.616e-022.578e-023.514e-01
Loi_GPL5700.20191.144e-011.271e-014.057e-01
Loi_GPL96-GPL970.17571.000e-061.200e-051.000e-06
Parker_GPL13900.21766.074e-027.476e-024.373e-01
Parker_GPL8870.03154.460e-014.651e-014.980e-01
Pawitan_GPL96-GPL970.35748.979e-018.737e-019.999e-01
Schmidt0.22941.797e-022.064e-022.174e-01
Sotiriou0.29011.751e-021.362e-022.575e-01
Van-De-Vijver0.24558.250e-041.187e-035.157e-02
Zhang0.27721.060e-016.540e-022.305e-01
Zhou0.43116.807e-025.659e-023.985e-01

Expression data for subnetwork 2305-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 2305-2-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI53529220.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.2010.2710.372
cdkn1aCDKN1A on ITI CDKN1A on NCBI447140.115-0.0200.0650.0820.0990.1240.0550.0870.0680.144undef-0.2010.069
tle1TLE1 on ITI TLE1 on NCBI476130.0620.235-0.032-0.1770.0330.0850.3390.0680.126-0.0270.1700.0680.025
ccnb1CCNB1 on ITI CCNB1 on NCBI42856390.0820.2460.2120.2240.2560.0990.1260.3510.1290.249undef0.1670.398
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
cks2CKS2 on ITI CKS2 on NCBI121834320.0500.2330.1700.1030.1860.1720.0930.1670.2630.1510.0800.2840.383
foxm1FOXM1 on ITI FOXM1 on NCBI11162882890.0590.1850.0910.1810.1280.100-0.0620.2310.2230.140undef0.176-0.236
tsc1TSC1 on ITI TSC1 on NCBI58418130.0490.012-0.0550.0720.055-0.144-0.242-0.1960.0060.0100.095-0.0070.207
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
sfnSFN on ITI SFN on NCBI613120.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.1580.0790.181

GO Enrichment output for subnetwork 2305-2-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.561E-128.191E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.072E-081.233E-05
interphaseGO:0051325GO:0051325 on GO1.205E-089.235E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO8.282E-073.81E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-062.333E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.576E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.254E-03
response to UVGO:0009411GO:0009411 on GO9.322E-062.382E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.645E-053.783E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.645E-053.439E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.938E-131.206E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.156E-092.633E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.171E-089.537E-06
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO3.476E-072.123E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.129E-061.04E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.005E-061.223E-03
response to UVGO:0009411GO:0009411 on GO3.923E-061.369E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO4.506E-061.376E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO7.458E-062.025E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO7.795E-061.904E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO7.795E-061.731E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO9.327E-132.244E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.152E-093.792E-06
interphaseGO:0051325GO:0051325 on GO3.69E-092.96E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.815E-081.092E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO4.853E-072.335E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.97E-061.191E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.766E-061.295E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO3.766E-061.133E-03
response to UVGO:0009411GO:0009411 on GO4.888E-061.307E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO9.94E-062.392E-03
negative regulation of kinase activityGO:0033673GO:0033673 on GO1.039E-052.274E-03


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.938E-131.206E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.156E-092.633E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.171E-089.537E-06
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO3.476E-072.123E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.129E-061.04E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.005E-061.223E-03
response to UVGO:0009411GO:0009411 on GO3.923E-061.369E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO4.506E-061.376E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO7.458E-062.025E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO7.795E-061.904E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO7.795E-061.731E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO9.327E-132.244E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.152E-093.792E-06
interphaseGO:0051325GO:0051325 on GO3.69E-092.96E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.815E-081.092E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO4.853E-072.335E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.97E-061.191E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.766E-061.295E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO3.766E-061.133E-03
response to UVGO:0009411GO:0009411 on GO4.888E-061.307E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO9.94E-062.392E-03
negative regulation of kinase activityGO:0033673GO:0033673 on GO1.039E-052.274E-03


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO9.331E-143.332E-10
cyclin-dependent protein kinase regulator activityGO:0016538GO:0016538 on GO2.114E-113.775E-08
protein kinase regulator activityGO:0019887GO:0019887 on GO1.639E-101.951E-07
kinase regulator activityGO:0019207GO:0019207 on GO4.235E-103.781E-07
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO5.842E-104.173E-07
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO8.812E-095.245E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.036E-085.283E-06
protein serine/threonine kinase inhibitor activityGO:0030291GO:0030291 on GO5.717E-082.552E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO1.067E-074.234E-05
protein kinase inhibitor activityGO:0004860GO:0004860 on GO5.124E-071.83E-04
kinase inhibitor activityGO:0019210GO:0019210 on GO6.346E-072.06E-04


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO6.28E-142.291E-10
cyclin-dependent protein kinase regulator activityGO:0016538GO:0016538 on GO4.099E-117.476E-08
protein kinase regulator activityGO:0019887GO:0019887 on GO1.16E-101.411E-07
kinase regulator activityGO:0019207GO:0019207 on GO2.393E-102.183E-07
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.315E-102.419E-07
interphaseGO:0051325GO:0051325 on GO3.755E-102.283E-07
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.016E-092.614E-06
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO6.139E-092.799E-06
protein serine/threonine kinase inhibitor activityGO:0030291GO:0030291 on GO6.125E-082.483E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO6.125E-082.234E-05
protein kinase inhibitor activityGO:0004860GO:0004860 on GO6.512E-072.16E-04


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO9.327E-132.244E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO3.152E-093.792E-06
interphaseGO:0051325GO:0051325 on GO3.69E-092.96E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.815E-081.092E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO4.853E-072.335E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.97E-061.191E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.766E-061.295E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO3.766E-061.133E-03
response to UVGO:0009411GO:0009411 on GO4.888E-061.307E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO9.94E-062.392E-03
negative regulation of kinase activityGO:0033673GO:0033673 on GO1.039E-052.274E-03


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.561E-128.191E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.072E-081.233E-05
interphaseGO:0051325GO:0051325 on GO1.205E-089.235E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO8.282E-073.81E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-062.333E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.576E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.254E-03
response to UVGO:0009411GO:0009411 on GO9.322E-062.382E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.645E-053.783E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.645E-053.439E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.561E-128.191E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.072E-081.233E-05
interphaseGO:0051325GO:0051325 on GO1.205E-089.235E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO8.282E-073.81E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-062.333E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.576E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.254E-03
response to UVGO:0009411GO:0009411 on GO9.322E-062.382E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.645E-053.783E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.645E-053.439E-03


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.198E-062.208E-03
positive regulation of cell growthGO:0030307GO:0030307 on GO6.331E-065.834E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO6.331E-063.89E-03
regulation of Rho GTPase activityGO:0032319GO:0032319 on GO6.331E-062.917E-03
positive regulation of Ras GTPase activityGO:0032320GO:0032320 on GO6.331E-062.334E-03
positive regulation of GTPase activityGO:0043547GO:0043547 on GO8.861E-062.722E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO8.861E-062.333E-03
negative regulation of signal transductionGO:0009968GO:0009968 on GO1.038E-052.391E-03
regulation of stress fiber formationGO:0051492GO:0051492 on GO1.181E-052.419E-03
release of cytochrome c from mitochondriaGO:0001836GO:0001836 on GO1.181E-052.177E-03
negative regulation of cell communicationGO:0010648GO:0010648 on GO1.275E-052.137E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.561E-128.191E-09
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.072E-081.233E-05
interphaseGO:0051325GO:0051325 on GO1.205E-089.235E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO8.282E-073.81E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-062.333E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.576E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-062.254E-03
response to UVGO:0009411GO:0009411 on GO9.322E-062.382E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.645E-053.783E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.645E-053.439E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.064E-121.676E-08
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.58E-081.875E-05
interphaseGO:0051325GO:0051325 on GO1.773E-081.402E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO7.882E-084.676E-05
G2/M transition of mitotic cell cycleGO:0000086GO:0000086 on GO9.725E-074.616E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO8.289E-063.278E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO8.632E-062.926E-03
response to UVGO:0009411GO:0009411 on GO1.167E-053.462E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.294E-053.412E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.811E-054.297E-03
negative regulation of cyclin-dependent protein kinase activityGO:0045736GO:0045736 on GO2.413E-055.205E-03


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