Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2139-2-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.13871.831e-021.486e-021.397e-01
IPC-NIBC-1290.29605.313e-027.625e-024.621e-01
Ivshina_GPL96-GPL970.22045.933e-031.033e-022.025e-01
Loi_GPL5700.21209.950e-021.111e-013.678e-01
Loi_GPL96-GPL970.17180.000e+002.000e-060.000e+00
Parker_GPL13900.26385.599e-026.919e-024.188e-01
Parker_GPL8870.05185.186e-015.373e-015.850e-01
Pawitan_GPL96-GPL970.37757.920e-017.481e-019.985e-01
Schmidt0.23511.964e-022.270e-022.311e-01
Sotiriou0.27302.318e-021.820e-022.992e-01
Van-De-Vijver0.25251.150e-031.655e-036.444e-02
Zhang0.27181.123e-017.036e-022.421e-01
Zhou0.41255.660e-024.447e-023.469e-01

Expression data for subnetwork 2139-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 2139-2-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI53529220.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.2010.2710.372
mcm3MCM3 on ITI MCM3 on NCBI1116253255-0.0200.1730.1130.0840.1100.1250.1510.2550.1710.1560.174-0.0030.335
mcm5MCM5 on ITI MCM5 on NCBI11162532550.0230.1210.1700.0150.0750.2090.1170.2280.1980.0110.1680.0530.185
eya2EYA2 on ITI EYA2 on NCBI11162532550.1310.1700.034-0.0020.0900.258-0.408-0.0840.0620.206undef-0.0340.109
ccnb1CCNB1 on ITI CCNB1 on NCBI42856390.0820.2460.2120.2240.2560.0990.1260.3510.1290.249undef0.1670.398
six1SIX1 on ITI SIX1 on NCBI1317123960.0970.1140.0950.1490.151-0.015-0.0060.1230.1130.1840.0820.1910.079
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
mcm6MCM6 on ITI MCM6 on NCBI11162532550.0210.2710.1480.0610.1210.090-0.0550.3200.2580.1440.1340.0840.283
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
orc6lORC6L on ITI ORC6L on NCBI151134280.0940.2700.0840.1140.1060.2400.2560.2340.1920.1050.2580.1750.160
mdfiMDFI on ITI MDFI on NCBI7304235-0.0500.2150.036-0.0050.0540.2630.1760.1300.296-0.0410.0740.0760.056

GO Enrichment output for subnetwork 2139-2-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO6.347E-101.46E-06
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO4.246E-084.883E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO7.149E-075.481E-04
interphaseGO:0051325GO:0051325 on GO7.842E-074.509E-04
cell fate specificationGO:0001708GO:0001708 on GO2.264E-061.042E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.178E-062.368E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO1.029E-053.38E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.038E-052.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.439E-053.679E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.785E-054.106E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO1.875E-053.92E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.057E-102.581E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.553E-081.897E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.04E-071.661E-04
cell fate specificationGO:0001708GO:0001708 on GO7.668E-074.683E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.937E-069.465E-04
muscle cell migrationGO:0014812GO:0014812 on GO2.705E-061.101E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.72E-061.298E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO4.055E-061.238E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO6.348E-061.723E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO6.635E-061.621E-03
positive regulation of ubiquitin-protein ligase activityGO:0051443GO:0051443 on GO7.545E-061.676E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.618E-103.892E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.86E-082.238E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.748E-072.204E-04
interphaseGO:0051325GO:0051325 on GO3.114E-071.873E-04
cell fate specificationGO:0001708GO:0001708 on GO9.671E-074.654E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.678E-061.074E-03
muscle cell migrationGO:0014812GO:0014812 on GO3.37E-061.158E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO5.053E-061.52E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.14E-061.374E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO8.768E-062.109E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO9.163E-062.004E-03


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.057E-102.581E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.553E-081.897E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.04E-071.661E-04
cell fate specificationGO:0001708GO:0001708 on GO7.668E-074.683E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.937E-069.465E-04
muscle cell migrationGO:0014812GO:0014812 on GO2.705E-061.101E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.72E-061.298E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO4.055E-061.238E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO6.348E-061.723E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO6.635E-061.621E-03
positive regulation of ubiquitin-protein ligase activityGO:0051443GO:0051443 on GO7.545E-061.676E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.618E-103.892E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.86E-082.238E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.748E-072.204E-04
interphaseGO:0051325GO:0051325 on GO3.114E-071.873E-04
cell fate specificationGO:0001708GO:0001708 on GO9.671E-074.654E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.678E-061.074E-03
muscle cell migrationGO:0014812GO:0014812 on GO3.37E-061.158E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO5.053E-061.52E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.14E-061.374E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO8.768E-062.109E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO9.163E-062.004E-03


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.067E-103.812E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO7.101E-081.268E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.824E-072.171E-04
cell fate specificationGO:0001708GO:0001708 on GO9.053E-078.082E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO3.366E-062.404E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.339E-062.583E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO6.21E-063.168E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO6.21E-062.772E-03
alpha DNA polymerase:primase complexGO:0005658GO:0005658 on GO6.21E-062.464E-03
nuclear origin of replication recognition complexGO:0005664GO:0005664 on GO6.21E-062.218E-03
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO1.158E-053.76E-03


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.316E-104.8E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.422E-082.593E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.568E-071.907E-04
interphaseGO:0051325GO:0051325 on GO1.731E-071.578E-04
cell fate specificationGO:0001708GO:0001708 on GO1.815E-061.325E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.448E-061.488E-03
origin recognition complexGO:0000808GO:0000808 on GO3.763E-061.961E-03
RNA polymerase II carboxy-terminal domain kinase activityGO:0008353GO:0008353 on GO3.763E-061.716E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO4.119E-061.67E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO5.642E-062.058E-03
alpha DNA polymerase:primase complexGO:0005658GO:0005658 on GO5.642E-061.871E-03


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO1.618E-103.892E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO1.86E-082.238E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.748E-072.204E-04
interphaseGO:0051325GO:0051325 on GO3.114E-071.873E-04
cell fate specificationGO:0001708GO:0001708 on GO9.671E-074.654E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.678E-061.074E-03
muscle cell migrationGO:0014812GO:0014812 on GO3.37E-061.158E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO5.053E-061.52E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO5.14E-061.374E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO8.768E-062.109E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO9.163E-062.004E-03


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO6.347E-101.46E-06
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO4.246E-084.883E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO7.149E-075.481E-04
interphaseGO:0051325GO:0051325 on GO7.842E-074.509E-04
cell fate specificationGO:0001708GO:0001708 on GO2.264E-061.042E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.178E-062.368E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO1.029E-053.38E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.038E-052.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.439E-053.679E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.785E-054.106E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO1.875E-053.92E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO6.347E-101.46E-06
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO4.246E-084.883E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO7.149E-075.481E-04
interphaseGO:0051325GO:0051325 on GO7.842E-074.509E-04
cell fate specificationGO:0001708GO:0001708 on GO2.264E-061.042E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.178E-062.368E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO1.029E-053.38E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.038E-052.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.439E-053.679E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.785E-054.106E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO1.875E-053.92E-03


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO4.72E-118.698E-08
DNA replicationGO:0006260GO:0006260 on GO7.456E-096.87E-06
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO8.835E-095.427E-06
muscle cell migrationGO:0014812GO:0014812 on GO8.861E-064.083E-03
cytoplasmic sequestering of transcription factorGO:0042994GO:0042994 on GO1.329E-054.897E-03
DNA unwinding during replicationGO:0006268GO:0006268 on GO1.329E-054.081E-03
thymus developmentGO:0048538GO:0048538 on GO1.329E-053.498E-03
axis specificationGO:0009798GO:0009798 on GO1.859E-054.283E-03
induction of an organGO:0001759GO:0001759 on GO1.859E-053.807E-03
thyroid gland developmentGO:0030878GO:0030878 on GO2.478E-054.566E-03
negative regulation of transcription factor import into nucleusGO:0042992GO:0042992 on GO2.478E-054.151E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO6.347E-101.46E-06
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO4.246E-084.883E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO7.149E-075.481E-04
interphaseGO:0051325GO:0051325 on GO7.842E-074.509E-04
cell fate specificationGO:0001708GO:0001708 on GO2.264E-061.042E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.178E-062.368E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO1.029E-053.38E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.038E-052.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.439E-053.679E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.785E-054.106E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO1.875E-053.92E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
DNA replication initiationGO:0006270GO:0006270 on GO3.792E-108.999E-07
DNA-dependent DNA replicationGO:0006261GO:0006261 on GO3.997E-084.743E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO4.494E-073.555E-04
interphaseGO:0051325GO:0051325 on GO4.925E-072.922E-04
cell fate specificationGO:0001708GO:0001708 on GO2.048E-069.72E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.512E-061.785E-03
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.949E-062.695E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.113E-053.3E-03
cell fate commitment involved in the formation of primary germ layersGO:0060795GO:0060795 on GO1.113E-052.934E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.544E-053.663E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycleGO:0051437GO:0051437 on GO1.843E-053.976E-03


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