Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1977-2-real
score
Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
Desmedt | 0.1759 | 1.814e-02 | 1.470e-02 | 1.387e-01 |
IPC-NIBC-129 | 0.2607 | 3.631e-02 | 5.297e-02 | 3.606e-01 |
Ivshina_GPL96-GPL97 | 0.2208 | 1.685e-02 | 2.679e-02 | 3.590e-01 |
Loi_GPL570 | 0.2332 | 7.421e-02 | 8.353e-02 | 2.966e-01 |
Loi_GPL96-GPL97 | 0.1699 | 1.000e-06 | 1.600e-05 | 2.000e-06 |
Parker_GPL1390 | 0.2156 | 9.610e-02 | 1.156e-01 | 5.504e-01 |
Parker_GPL887 | 0.0327 | 4.163e-01 | 4.354e-01 | 4.619e-01 |
Pawitan_GPL96-GPL97 | 0.3719 | 8.917e-01 | 8.662e-01 | 9.998e-01 |
Schmidt | 0.1969 | 1.598e-02 | 1.821e-02 | 2.005e-01 |
Sotiriou | 0.2784 | 2.123e-02 | 1.662e-02 | 2.856e-01 |
Van-De-Vijver | 0.2802 | 7.930e-04 | 1.142e-03 | 5.022e-02 |
Zhang | 0.2843 | 1.157e-01 | 7.304e-02 | 2.482e-01 |
Zhou | 0.4333 | 5.961e-02 | 4.759e-02 | 3.609e-01 |
Expression data for subnetwork 1977-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt

Score for each gene in subnetwork 1977-2-real in each dataset
Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
cdkn3 |  | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
rps6kb1 |  | 5 | 40 | 216 | 200 | -0.048 | 0.004 | 0.033 | 0.144 | 0.128 | 0.095 | -0.319 | 0.022 | 0.116 | 0.084 | 0.068 | 0.076 | 0.280 |
eif4ebp1 |  | 4 | 50 | 260 | 239 | 0.158 | 0.203 | 0.132 | 0.139 | 0.104 | 0.122 | 0.119 | 0.252 | 0.031 | 0.042 | 0.188 | 0.029 | 0.219 |
tle1 |  | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
ccnb1 |  | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
ccnd1 |  | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
tsc1 |  | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
cdc2 |  | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
eif4e |  | 3 | 62 | 260 | 243 | -0.022 | 0.107 | 0.073 | 0.165 | 0.095 | 0.122 | -0.091 | 0.012 | 0.152 | 0.113 | 0.058 | 0.107 | 0.083 |
sfn |  | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
GO Enrichment output for subnetwork 1977-2-real in each dataset
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of translation | GO:0006417 |  | 6.041E-08 | 1.389E-04 |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 2.772E-04 |
negative regulation of translation | GO:0017148 |  | 6.041E-07 | 4.631E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 2E-06 | 1.15E-03 |
interphase | GO:0051325 |  | 2.193E-06 | 1.009E-03 |
translational initiation | GO:0006413 |  | 2.785E-06 | 1.068E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 1.117E-05 | 3.67E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.117E-05 | 3.211E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.307E-05 | 3.34E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.674E-05 | 3.851E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 2.343E-05 | 4.898E-03 |
IPC-NIBC-129 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.329E-08 | 1.79E-04 |
negative regulation of translation | GO:0017148 |  | 3.476E-07 | 4.246E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 6.573E-07 | 5.353E-04 |
translational initiation | GO:0006413 |  | 1.11E-06 | 6.777E-04 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 4.573E-06 | 2.234E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.743E-06 | 1.931E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 7.112E-06 | 2.482E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.326E-05 | 4.05E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.326E-05 | 3.6E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.326E-05 | 3.24E-03 |
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 |  | 1.494E-05 | 3.319E-03 |
Ivshina_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.191E-07 | 2.865E-04 |
negative regulation of translation | GO:0017148 |  | 5.024E-07 | 6.043E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.404E-07 | 7.542E-04 |
interphase | GO:0051325 |  | 1.065E-06 | 6.408E-04 |
translational initiation | GO:0006413 |  | 1.603E-06 | 7.712E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 6.077E-06 | 2.437E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 6.077E-06 | 2.089E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 6.599E-06 | 1.985E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.699E-05 | 4.542E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.699E-05 | 4.088E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.699E-05 | 3.716E-03 |
Loi_GPL570 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.329E-08 | 1.79E-04 |
negative regulation of translation | GO:0017148 |  | 3.476E-07 | 4.246E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 6.573E-07 | 5.353E-04 |
translational initiation | GO:0006413 |  | 1.11E-06 | 6.777E-04 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 4.573E-06 | 2.234E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 4.743E-06 | 1.931E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 7.112E-06 | 2.482E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.326E-05 | 4.05E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.326E-05 | 3.6E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.326E-05 | 3.24E-03 |
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 |  | 1.494E-05 | 3.319E-03 |
Loi_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.191E-07 | 2.865E-04 |
negative regulation of translation | GO:0017148 |  | 5.024E-07 | 6.043E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.404E-07 | 7.542E-04 |
interphase | GO:0051325 |  | 1.065E-06 | 6.408E-04 |
translational initiation | GO:0006413 |  | 1.603E-06 | 7.712E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 6.077E-06 | 2.437E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 6.077E-06 | 2.089E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 6.599E-06 | 1.985E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.699E-05 | 4.542E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.699E-05 | 4.088E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.699E-05 | 3.716E-03 |
Parker_GPL1390 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.46E-08 | 5.213E-05 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.099E-07 | 1.963E-04 |
negative regulation of translation | GO:0017148 |  | 1.28E-07 | 1.524E-04 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 2.361E-06 | 2.108E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 3.314E-06 | 2.367E-03 |
eukaryotic initiation factor 4E binding | GO:0008190 |  | 3.314E-06 | 1.972E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 4.969E-06 | 2.535E-03 |
protein kinase regulator activity | GO:0019887 |  | 6.445E-06 | 2.877E-03 |
regulation of phosphoprotein phosphatase activity | GO:0043666 |  | 6.954E-06 | 2.759E-03 |
negative regulation of translational initiation | GO:0045947 |  | 6.954E-06 | 2.483E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 6.954E-06 | 2.258E-03 |
Parker_GPL887 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.014E-08 | 3.698E-05 |
interphase of mitotic cell cycle | GO:0051329 |  | 6.696E-08 | 1.221E-04 |
interphase | GO:0051325 |  | 7.392E-08 | 8.989E-05 |
negative regulation of translation | GO:0017148 |  | 8.92E-08 | 8.135E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.34E-06 | 9.773E-04 |
response to insulin stimulus | GO:0032868 |  | 1.758E-06 | 1.069E-03 |
positive regulation of cell-matrix adhesion | GO:0001954 |  | 2.566E-06 | 1.337E-03 |
RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 |  | 2.566E-06 | 1.17E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 3.848E-06 | 1.56E-03 |
negative regulation of translational initiation | GO:0045947 |  | 3.848E-06 | 1.404E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 3.848E-06 | 1.276E-03 |
Pawitan_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.191E-07 | 2.865E-04 |
negative regulation of translation | GO:0017148 |  | 5.024E-07 | 6.043E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.404E-07 | 7.542E-04 |
interphase | GO:0051325 |  | 1.065E-06 | 6.408E-04 |
translational initiation | GO:0006413 |  | 1.603E-06 | 7.712E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 6.077E-06 | 2.437E-03 |
activation of Ras GTPase activity | GO:0032856 |  | 6.077E-06 | 2.089E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 6.599E-06 | 1.985E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.699E-05 | 4.542E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.699E-05 | 4.088E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.699E-05 | 3.716E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of translation | GO:0006417 |  | 6.041E-08 | 1.389E-04 |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 2.772E-04 |
negative regulation of translation | GO:0017148 |  | 6.041E-07 | 4.631E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 2E-06 | 1.15E-03 |
interphase | GO:0051325 |  | 2.193E-06 | 1.009E-03 |
translational initiation | GO:0006413 |  | 2.785E-06 | 1.068E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 1.117E-05 | 3.67E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.117E-05 | 3.211E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.307E-05 | 3.34E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.674E-05 | 3.851E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 2.343E-05 | 4.898E-03 |
Sotiriou file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of translation | GO:0006417 |  | 6.041E-08 | 1.389E-04 |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 2.772E-04 |
negative regulation of translation | GO:0017148 |  | 6.041E-07 | 4.631E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 2E-06 | 1.15E-03 |
interphase | GO:0051325 |  | 2.193E-06 | 1.009E-03 |
translational initiation | GO:0006413 |  | 2.785E-06 | 1.068E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 1.117E-05 | 3.67E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.117E-05 | 3.211E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.307E-05 | 3.34E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.674E-05 | 3.851E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 2.343E-05 | 4.898E-03 |
Van-De-Vijver file
Name | Accession Number | Link | P-val | Corrected P-val |
negative regulation of translation | GO:0017148 |  | 1.414E-07 | 2.605E-04 |
regulation of translation | GO:0006417 |  | 3.171E-07 | 2.922E-04 |
posttranscriptional regulation of gene expression | GO:0010608 |  | 1.311E-06 | 8.057E-04 |
positive regulation of cell growth | GO:0030307 |  | 1.329E-05 | 6.121E-03 |
regulation of focal adhesion formation | GO:0051893 |  | 1.329E-05 | 4.897E-03 |
regulation of Rho GTPase activity | GO:0032319 |  | 1.329E-05 | 4.081E-03 |
positive regulation of Ras GTPase activity | GO:0032320 |  | 1.329E-05 | 3.498E-03 |
positive regulation of GTPase activity | GO:0043547 |  | 1.859E-05 | 4.283E-03 |
keratinocyte proliferation | GO:0043616 |  | 1.859E-05 | 3.807E-03 |
negative regulation of cellular protein metabolic process | GO:0032269 |  | 2.153E-05 | 3.968E-03 |
regulation of stress fiber formation | GO:0051492 |  | 2.478E-05 | 4.151E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of translation | GO:0006417 |  | 6.041E-08 | 1.389E-04 |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.411E-07 | 2.772E-04 |
negative regulation of translation | GO:0017148 |  | 6.041E-07 | 4.631E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 2E-06 | 1.15E-03 |
interphase | GO:0051325 |  | 2.193E-06 | 1.009E-03 |
translational initiation | GO:0006413 |  | 2.785E-06 | 1.068E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 1.117E-05 | 3.67E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.117E-05 | 3.211E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.307E-05 | 3.34E-03 |
negative regulation of translational initiation | GO:0045947 |  | 1.674E-05 | 3.851E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 2.343E-05 | 4.898E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.601E-07 | 6.171E-04 |
negative regulation of translation | GO:0017148 |  | 1.143E-06 | 1.357E-03 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.931E-06 | 1.528E-03 |
interphase | GO:0051325 |  | 2.116E-06 | 1.255E-03 |
translational initiation | GO:0006413 |  | 3.268E-06 | 1.551E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 1.06E-05 | 4.192E-03 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.307E-05 | 4.43E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.589E-05 | 4.713E-03 |
positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 2.223E-05 | 5.861E-03 |
negative regulation of translational initiation | GO:0045947 |  | 2.223E-05 | 5.275E-03 |
keratinocyte proliferation | GO:0043616 |  | 2.962E-05 | 6.39E-03 |