Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1977-2-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.17591.814e-021.470e-021.387e-01
IPC-NIBC-1290.26073.631e-025.297e-023.606e-01
Ivshina_GPL96-GPL970.22081.685e-022.679e-023.590e-01
Loi_GPL5700.23327.421e-028.353e-022.966e-01
Loi_GPL96-GPL970.16991.000e-061.600e-052.000e-06
Parker_GPL13900.21569.610e-021.156e-015.504e-01
Parker_GPL8870.03274.163e-014.354e-014.619e-01
Pawitan_GPL96-GPL970.37198.917e-018.662e-019.998e-01
Schmidt0.19691.598e-021.821e-022.005e-01
Sotiriou0.27842.123e-021.662e-022.856e-01
Van-De-Vijver0.28027.930e-041.142e-035.022e-02
Zhang0.28431.157e-017.304e-022.482e-01
Zhou0.43335.961e-024.759e-023.609e-01

Expression data for subnetwork 1977-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 1977-2-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouVan-De-VijverZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI53529220.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.2010.2710.372
rps6kb1RPS6KB1 on ITI RPS6KB1 on NCBI540216200-0.0480.0040.0330.1440.1280.095-0.3190.0220.1160.0840.0680.0760.280
eif4ebp1EIF4EBP1 on ITI EIF4EBP1 on NCBI4502602390.1580.2030.1320.1390.1040.1220.1190.2520.0310.0420.1880.0290.219
tle1TLE1 on ITI TLE1 on NCBI476130.0620.235-0.032-0.1770.0330.0850.3390.0680.126-0.0270.1700.0680.025
ccnb1CCNB1 on ITI CCNB1 on NCBI42856390.0820.2460.2120.2240.2560.0990.1260.3510.1290.249undef0.1670.398
ccnd1CCND1 on ITI CCND1 on NCBI92218120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.174undef0.1440.290
tsc1TSC1 on ITI TSC1 on NCBI58418130.0490.012-0.0550.0720.055-0.144-0.242-0.1960.0060.0100.095-0.0070.207
cdc2CDC2 on ITI CDC2 on NCBI961110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.1620.2970.336
eif4eEIF4E on ITI EIF4E on NCBI362260243-0.0220.1070.0730.1650.0950.122-0.0910.0120.1520.1130.0580.1070.083
sfnSFN on ITI SFN on NCBI613120.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.1580.0790.181

GO Enrichment output for subnetwork 1977-2-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO6.041E-081.389E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.411E-072.772E-04
negative regulation of translationGO:0017148GO:0017148 on GO6.041E-074.631E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2E-061.15E-03
interphaseGO:0051325GO:0051325 on GO2.193E-061.009E-03
translational initiationGO:0006413GO:0006413 on GO2.785E-061.068E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.117E-053.67E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.117E-053.211E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.307E-053.34E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.674E-053.851E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.343E-054.898E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.329E-081.79E-04
negative regulation of translationGO:0017148GO:0017148 on GO3.476E-074.246E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO6.573E-075.353E-04
translational initiationGO:0006413GO:0006413 on GO1.11E-066.777E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.573E-062.234E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.743E-061.931E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO7.112E-062.482E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.326E-054.05E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.326E-053.6E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.326E-053.24E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.494E-053.319E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.191E-072.865E-04
negative regulation of translationGO:0017148GO:0017148 on GO5.024E-076.043E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.404E-077.542E-04
interphaseGO:0051325GO:0051325 on GO1.065E-066.408E-04
translational initiationGO:0006413GO:0006413 on GO1.603E-067.712E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO6.077E-062.437E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO6.077E-062.089E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.599E-061.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.699E-054.542E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.699E-054.088E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.699E-053.716E-03


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO7.329E-081.79E-04
negative regulation of translationGO:0017148GO:0017148 on GO3.476E-074.246E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO6.573E-075.353E-04
translational initiationGO:0006413GO:0006413 on GO1.11E-066.777E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO4.573E-062.234E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO4.743E-061.931E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO7.112E-062.482E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.326E-054.05E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.326E-053.6E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.326E-053.24E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processGO:0031145GO:0031145 on GO1.494E-053.319E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.191E-072.865E-04
negative regulation of translationGO:0017148GO:0017148 on GO5.024E-076.043E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.404E-077.542E-04
interphaseGO:0051325GO:0051325 on GO1.065E-066.408E-04
translational initiationGO:0006413GO:0006413 on GO1.603E-067.712E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO6.077E-062.437E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO6.077E-062.089E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.599E-061.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.699E-054.542E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.699E-054.088E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.699E-053.716E-03


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.46E-085.213E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.099E-071.963E-04
negative regulation of translationGO:0017148GO:0017148 on GO1.28E-071.524E-04
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO2.361E-062.108E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO3.314E-062.367E-03
eukaryotic initiation factor 4E bindingGO:0008190GO:0008190 on GO3.314E-061.972E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO4.969E-062.535E-03
protein kinase regulator activityGO:0019887GO:0019887 on GO6.445E-062.877E-03
regulation of phosphoprotein phosphatase activityGO:0043666GO:0043666 on GO6.954E-062.759E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO6.954E-062.483E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO6.954E-062.258E-03


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.014E-083.698E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO6.696E-081.221E-04
interphaseGO:0051325GO:0051325 on GO7.392E-088.989E-05
negative regulation of translationGO:0017148GO:0017148 on GO8.92E-088.135E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.34E-069.773E-04
response to insulin stimulusGO:0032868GO:0032868 on GO1.758E-061.069E-03
positive regulation of cell-matrix adhesionGO:0001954GO:0001954 on GO2.566E-061.337E-03
RNA polymerase II carboxy-terminal domain kinase activityGO:0008353GO:0008353 on GO2.566E-061.17E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO3.848E-061.56E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO3.848E-061.404E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO3.848E-061.276E-03


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.191E-072.865E-04
negative regulation of translationGO:0017148GO:0017148 on GO5.024E-076.043E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.404E-077.542E-04
interphaseGO:0051325GO:0051325 on GO1.065E-066.408E-04
translational initiationGO:0006413GO:0006413 on GO1.603E-067.712E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO6.077E-062.437E-03
activation of Ras GTPase activityGO:0032856GO:0032856 on GO6.077E-062.089E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.599E-061.985E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO1.699E-054.542E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.699E-054.088E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.699E-053.716E-03


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO6.041E-081.389E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.411E-072.772E-04
negative regulation of translationGO:0017148GO:0017148 on GO6.041E-074.631E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2E-061.15E-03
interphaseGO:0051325GO:0051325 on GO2.193E-061.009E-03
translational initiationGO:0006413GO:0006413 on GO2.785E-061.068E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.117E-053.67E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.117E-053.211E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.307E-053.34E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.674E-053.851E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.343E-054.898E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO6.041E-081.389E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.411E-072.772E-04
negative regulation of translationGO:0017148GO:0017148 on GO6.041E-074.631E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2E-061.15E-03
interphaseGO:0051325GO:0051325 on GO2.193E-061.009E-03
translational initiationGO:0006413GO:0006413 on GO2.785E-061.068E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.117E-053.67E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.117E-053.211E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.307E-053.34E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.674E-053.851E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.343E-054.898E-03


Van-De-Vijver file

NameAccession NumberLinkP-valCorrected P-val
negative regulation of translationGO:0017148GO:0017148 on GO1.414E-072.605E-04
regulation of translationGO:0006417GO:0006417 on GO3.171E-072.922E-04
posttranscriptional regulation of gene expressionGO:0010608GO:0010608 on GO1.311E-068.057E-04
positive regulation of cell growthGO:0030307GO:0030307 on GO1.329E-056.121E-03
regulation of focal adhesion formationGO:0051893GO:0051893 on GO1.329E-054.897E-03
regulation of Rho GTPase activityGO:0032319GO:0032319 on GO1.329E-054.081E-03
positive regulation of Ras GTPase activityGO:0032320GO:0032320 on GO1.329E-053.498E-03
positive regulation of GTPase activityGO:0043547GO:0043547 on GO1.859E-054.283E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO1.859E-053.807E-03
negative regulation of cellular protein metabolic processGO:0032269GO:0032269 on GO2.153E-053.968E-03
regulation of stress fiber formationGO:0051492GO:0051492 on GO2.478E-054.151E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
regulation of translationGO:0006417GO:0006417 on GO6.041E-081.389E-04
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.411E-072.772E-04
negative regulation of translationGO:0017148GO:0017148 on GO6.041E-074.631E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2E-061.15E-03
interphaseGO:0051325GO:0051325 on GO2.193E-061.009E-03
translational initiationGO:0006413GO:0006413 on GO2.785E-061.068E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.117E-053.67E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.117E-053.211E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.307E-053.34E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO1.674E-053.851E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.343E-054.898E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO2.601E-076.171E-04
negative regulation of translationGO:0017148GO:0017148 on GO1.143E-061.357E-03
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.931E-061.528E-03
interphaseGO:0051325GO:0051325 on GO2.116E-061.255E-03
translational initiationGO:0006413GO:0006413 on GO3.268E-061.551E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO1.06E-054.192E-03
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.307E-054.43E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.589E-054.713E-03
positive regulation of cyclin-dependent protein kinase activityGO:0045737GO:0045737 on GO2.223E-055.861E-03
negative regulation of translational initiationGO:0045947GO:0045947 on GO2.223E-055.275E-03
keratinocyte proliferationGO:0043616GO:0043616 on GO2.962E-056.39E-03


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