Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1460-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2076 | 7.143e-03 | 5.111e-03 | 6.651e-02 |
|---|
| IPC-NIBC-129 | 0.1987 | 5.132e-02 | 7.377e-02 | 4.523e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2661 | 1.098e-02 | 1.811e-02 | 2.867e-01 |
|---|
| Loi_GPL570 | 0.2620 | 4.936e-02 | 5.618e-02 | 2.163e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1622 | 1.130e-04 | 6.480e-04 | 2.272e-03 |
|---|
| Parker_GPL1390 | 0.2355 | 1.061e-01 | 1.270e-01 | 5.763e-01 |
|---|
| Parker_GPL887 | 0.1821 | 3.431e-01 | 3.617e-01 | 3.716e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3925 | 2.473e-01 | 1.832e-01 | 8.151e-01 |
|---|
| Schmidt | 0.1899 | 2.289e-02 | 2.671e-02 | 2.560e-01 |
|---|
| Sotiriou | 0.3295 | 9.083e-03 | 6.928e-03 | 1.783e-01 |
|---|
| Van-De-Vijver | 0.2550 | 5.720e-04 | 8.220e-04 | 4.015e-02 |
|---|
| Zhang | 0.2625 | 1.299e-01 | 8.452e-02 | 2.733e-01 |
|---|
| Zhou | 0.4515 | 4.931e-02 | 3.710e-02 | 3.113e-01 |
|---|
Expression data for subnetwork 1460-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1460-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| tbl3 | | 2 | 78 | 120 | 117 | 0.068 | -0.007 | 0.137 | 0.048 | 0.104 | -0.071 | 0.518 | 0.154 | 0.067 | 0.128 | undef | 0.054 | 0.267 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| dhx30 | | 2 | 78 | 120 | 117 | 0.066 | -0.039 | 0.122 | -0.072 | 0.099 | 0.272 | -0.261 | 0.326 | 0.065 | 0.160 | 0.026 | 0.015 | 0.304 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| csnk2b | | 2 | 78 | 120 | 117 | 0.039 | 0.147 | 0.116 | 0.078 | 0.110 | 0.233 | -0.494 | 0.221 | 0.113 | 0.028 | 0.096 | -0.102 | 0.136 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 1460-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.975E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.207E-05 | 3.469E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.066E-08 | 2.604E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.123E-06 | 1.371E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 2.847E-06 | 1.739E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.391E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 2.162E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.853E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.826E-06 | 2.085E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.531E-06 | 2.316E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.531E-06 | 2.084E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 8.584E-06 | 1.906E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.469E-06 | 1.669E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 2.224E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.502E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 9.633E-06 | 2.318E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.066E-08 | 2.604E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.123E-06 | 1.371E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 2.847E-06 | 1.739E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.391E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 2.162E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.853E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.826E-06 | 2.085E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.531E-06 | 2.316E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.531E-06 | 2.084E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 8.584E-06 | 1.906E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.469E-06 | 1.669E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 2.224E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.502E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 9.633E-06 | 2.318E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.076E-09 | 1.455E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.122E-08 | 2.003E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 2.384E-08 | 2.838E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.881E-07 | 8.821E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.933E-06 | 1.381E-03 |
|---|
| small-subunit processome | GO:0032040 | | 1.933E-06 | 1.151E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.9E-06 | 1.479E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 2.9E-06 | 1.294E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 2.967E-06 | 1.177E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 3.862E-06 | 1.379E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.058E-06 | 1.318E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.392E-09 | 1.238E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.271E-07 | 1.144E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 1.597E-06 | 1.942E-03 |
|---|
| small-subunit processome | GO:0032040 | | 1.597E-06 | 1.457E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 1.597E-06 | 1.165E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.315E-06 | 1.407E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.395E-06 | 1.248E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.395E-06 | 1.092E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.395E-06 | 9.708E-04 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.352E-06 | 1.223E-03 |
|---|
| preribosome | GO:0030684 | | 3.352E-06 | 1.112E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.469E-06 | 1.669E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 2.224E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.502E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 9.633E-06 | 2.318E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.975E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.207E-05 | 3.469E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.975E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.207E-05 | 3.469E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell growth | GO:0030307 | | 6.331E-06 | 0.01166884 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.331E-06 | 5.834E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 6.331E-06 | 3.89E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.331E-06 | 2.917E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.861E-06 | 3.266E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.861E-06 | 2.722E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.181E-05 | 3.11E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.181E-05 | 2.721E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 1.518E-05 | 3.109E-03 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.518E-05 | 2.798E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 1.518E-05 | 2.544E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 6.469E-06 | 2.976E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.975E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.207E-05 | 3.469E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.41E-08 | 1.047E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.616E-06 | 4.29E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.596E-06 | 3.635E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 6.891E-06 | 4.088E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.891E-06 | 3.271E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.644E-06 | 3.814E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.285E-05 | 4.357E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.285E-05 | 3.813E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.064E-05 | 5.442E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.064E-05 | 4.898E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.064E-05 | 4.453E-03 |
|---|
