Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1173-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2627 | 1.134e-02 | 8.638e-03 | 9.633e-02 |
|---|
| IPC-NIBC-129 | 0.2517 | 2.287e-02 | 3.395e-02 | 2.580e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2438 | 1.307e-02 | 2.125e-02 | 3.147e-01 |
|---|
| Loi_GPL570 | 0.2535 | 5.570e-02 | 6.319e-02 | 2.379e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1544 | 2.000e-06 | 2.700e-05 | 6.000e-06 |
|---|
| Parker_GPL1390 | 0.2274 | 1.244e-01 | 1.476e-01 | 6.190e-01 |
|---|
| Parker_GPL887 | 0.1026 | 2.431e-01 | 2.598e-01 | 2.485e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2865 | 5.294e-01 | 4.576e-01 | 9.735e-01 |
|---|
| Schmidt | 0.1785 | 2.039e-01 | 2.577e-01 | 7.988e-01 |
|---|
| Sotiriou | 0.3104 | 1.250e-02 | 9.623e-03 | 2.138e-01 |
|---|
| Van-De-Vijver | 0.3136 | 7.100e-04 | 1.022e-03 | 4.657e-02 |
|---|
| Zhang | 0.1253 | 1.460e-01 | 9.788e-02 | 3.008e-01 |
|---|
| Zhou | 0.4395 | 1.289e-01 | 1.280e-01 | 6.059e-01 |
|---|
Expression data for subnetwork 1173-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1173-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| scyl2 |   | 1 | 116 | 272 | 272 | 0.137 | 0.175 | 0.011 | -0.072 | 0.069 | 0.079 | -0.243 | 0.118 | -0.028 | 0.130 | 0.086 | -0.162 | 0.113 |
|---|
| cltc | | 1 | 116 | 272 | 272 | 0.075 | 0.118 | 0.075 | 0.072 | 0.176 | 0.002 | -0.125 | 0.213 | -0.013 | 0.095 | 0.110 | -0.025 | 0.294 |
|---|
| hsp90aa1 | | 5 | 40 | 106 | 90 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.155 | -0.199 | 0.169 | 0.069 | 0.102 | undef | -0.011 | 0.399 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| ndrg1 | | 4 | 50 | 184 | 168 | 0.072 | 0.301 | 0.084 | 0.324 | 0.108 | 0.102 | 0.240 | 0.083 | 0.068 | 0.064 | 0.223 | 0.092 | -0.255 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| ap1g1 | | 1 | 116 | 272 | 272 | 0.195 | 0.010 | 0.045 | -0.085 | 0.074 | 0.093 | 0.031 | 0.045 | 0.122 | 0.081 | 0.126 | -0.040 | 0.332 |
|---|
| ap2m1 | | 2 | 78 | 211 | 207 | 0.089 | 0.224 | 0.153 | 0.180 | 0.060 | 0.191 | -0.033 | 0.015 | 0.103 | 0.050 | undef | -0.044 | 0.255 |
|---|
| gak | | 2 | 78 | 211 | 207 | 0.120 | -0.018 | 0.068 | 0.106 | 0.092 | 0.098 | -0.067 | 0.059 | -0.069 | 0.056 | 0.030 | 0.016 | 0.236 |
|---|
| hgs | | 1 | 116 | 272 | 272 | 0.150 | 0.114 | 0.088 | -0.153 | 0.105 | 0.240 | 0.016 | 0.062 | 0.053 | 0.067 | 0.179 | -0.054 | 0.330 |
|---|
| birc5 | | 5 | 40 | 103 | 89 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | undef | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 1173-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 1.371E-05 | 0.03154099 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 0.01573263 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 0.0118193 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 9.455E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 7.88E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.876E-05 | 8.268E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 7.349E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.876E-05 | 6.614E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 2.876E-05 | 6.013E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 0.01567831 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 8.239E-06 | 0.01006409 |
|---|
| protein refolding | GO:0042026 | | 9.622E-06 | 7.835E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 5.876E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.346E-05 | 6.578E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.346E-05 | 5.482E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.346E-05 | 4.699E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 5.479E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.794E-05 | 4.87E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.794E-05 | 4.383E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.794E-05 | 3.985E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 0.01075063 |
|---|
| protein refolding | GO:0042026 | | 1.34E-05 | 0.0107442 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 8.111E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.874E-05 | 7.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.874E-05 | 6.443E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 7.512E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 2.498E-05 | 6.677E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.498E-05 | 6.01E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.498E-05 | 5.463E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 0.01567831 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 8.239E-06 | 0.01006409 |
|---|
| protein refolding | GO:0042026 | | 9.622E-06 | 7.835E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 5.876E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.346E-05 | 6.578E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.346E-05 | 5.482E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.346E-05 | 4.699E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 5.479E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.794E-05 | 4.87E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 1.794E-05 | 4.383E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.794E-05 | 3.985E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 0.01075063 |
|---|
| protein refolding | GO:0042026 | | 1.34E-05 | 0.0107442 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 8.111E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.874E-05 | 7.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.874E-05 | 6.443E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 7.512E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 2.498E-05 | 6.677E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.498E-05 | 6.01E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.498E-05 | 5.463E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| clathrin coat | GO:0030118 | | 1.225E-08 | 4.375E-05 |
|---|
| clathrin coat of coated pit | GO:0030132 | | 2.594E-08 | 4.632E-05 |
|---|
| coated membrane | GO:0048475 | | 9.174E-08 | 1.092E-04 |
|---|
| AP-type membrane coat adaptor complex | GO:0030119 | | 1.243E-06 | 1.11E-03 |
|---|
| coated pit | GO:0005905 | | 2.181E-06 | 1.558E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 5.061E-06 | 3.012E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 5.061E-06 | 2.582E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.061E-06 | 2.259E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.589E-06 | 3.011E-03 |
|---|
| mast cell activation | GO:0045576 | | 7.589E-06 | 2.71E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 7.589E-06 | 2.464E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| clathrin coat | GO:0030118 | | 6.408E-09 | 2.338E-05 |
|---|
| clathrin coat of coated pit | GO:0030132 | | 2.192E-08 | 3.999E-05 |
|---|
| coated membrane | GO:0048475 | | 4.336E-08 | 5.273E-05 |
|---|
| midbody | GO:0030496 | | 5.735E-08 | 5.23E-05 |
|---|
| spindle microtubule | GO:0005876 | | 2.122E-07 | 1.548E-04 |
|---|
| chaperone binding | GO:0051087 | | 2.962E-07 | 1.801E-04 |
|---|
| AP-type membrane coat adaptor complex | GO:0030119 | | 6.74E-07 | 3.512E-04 |
|---|
| coated pit | GO:0005905 | | 2.005E-06 | 9.144E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.177E-06 | 1.288E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 4.447E-06 | 1.622E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 4.447E-06 | 1.475E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 0.01075063 |
|---|
| protein refolding | GO:0042026 | | 1.34E-05 | 0.0107442 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 8.111E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.874E-05 | 7.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.874E-05 | 6.443E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 7.512E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 2.498E-05 | 6.677E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.498E-05 | 6.01E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.498E-05 | 5.463E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 0.01573263 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 0.0118193 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 9.455E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 7.88E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.876E-05 | 8.268E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 7.349E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.876E-05 | 6.614E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 2.876E-05 | 6.013E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 0.01573263 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 0.0118193 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 9.455E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 7.88E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.876E-05 | 8.268E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 7.349E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.876E-05 | 6.614E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 2.876E-05 | 6.013E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.329E-05 | 0.02448556 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.329E-05 | 0.01224278 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.329E-05 | 8.162E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.329E-05 | 6.121E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.859E-05 | 6.853E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.478E-05 | 7.61E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 3.184E-05 | 8.383E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 3.184E-05 | 7.335E-03 |
|---|
| negative regulation of signal transduction | GO:0009968 | | 3.579E-05 | 7.329E-03 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 3.978E-05 | 7.331E-03 |
|---|
| negative regulation of cell communication | GO:0010648 | | 4.393E-05 | 7.36E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.03154099 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 0.01573263 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 0.0118193 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 9.455E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 7.88E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.876E-05 | 8.268E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 7.349E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.876E-05 | 6.614E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein refolding | GO:0042026 | | 2.696E-08 | 6.397E-05 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 4.714E-08 | 5.594E-05 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 7.537E-08 | 5.962E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 1.521E-06 | 9.021E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.028E-06 | 9.624E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 2.586E-06 | 1.023E-03 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 2.691E-06 | 9.124E-04 |
|---|
| mitochondrial membrane organization | GO:0007006 | | 3.056E-06 | 9.065E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.277E-05 | 3.366E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.277E-05 | 3.029E-03 |
|---|
| galactolipid metabolic process | GO:0019374 | | 1.277E-05 | 2.754E-03 |
|---|
