Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1033-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2041	1.495e-02	1.182e-02	1.196e-01
IPC-NIBC-129	0.2604	3.214e-02	4.712e-02	3.313e-01
Ivshina_GPL96-GPL97	0.2303	1.841e-02	2.902e-02	3.753e-01
Loi_GPL570	0.1926	1.299e-01	1.438e-01	4.426e-01
Loi_GPL96-GPL97	0.1829	1.000e-06	1.600e-05	2.000e-06
Parker_GPL1390	0.2116	7.207e-02	8.797e-02	4.778e-01
Parker_GPL887	0.0995	3.507e-01	3.694e-01	3.810e-01
Pawitan_GPL96-GPL97	0.4078	5.437e-01	4.728e-01	9.764e-01
Schmidt	0.2173	2.148e-02	2.497e-02	2.454e-01
Sotiriou	0.2970	1.561e-02	1.210e-02	2.419e-01
Van-De-Vijver	0.2890	8.860e-04	1.276e-03	5.412e-02
Zhang	0.2664	9.495e-02	5.695e-02	2.101e-01
Zhou	0.4271	4.280e-02	3.077e-02	2.775e-01

Expression data for subnetwork 1033-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Van-De-Vijver Zhang Zhou

Desmedt

Score for each gene in subnetwork 1033-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Van-De-Vijver	Zhang	Zhou
cdkn3		53	5	29	22	0.114	0.269	0.199	0.136	0.193	0.166	-0.009	0.323	0.186	0.198	0.201	0.271	0.372
ccnb2		12	18	84	62	0.164	0.176	0.204	0.123	0.172	0.178	0.090	0.366	0.240	0.169	0.279	0.211	0.463
cdkn1a		44	7	1	4	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	undef	-0.201	0.069
tle1		47	6	1	3	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	0.170	0.068	0.025
lmna		4	50	132	120	0.075	0.053	0.013	-0.214	0.063	0.127	0.231	0.096	-0.031	0.019	0.119	-0.196	0.191
ccnb1		42	8	56	39	0.082	0.246	0.212	0.224	0.256	0.099	0.126	0.351	0.129	0.249	undef	0.167	0.398
six1		13	17	123	96	0.097	0.114	0.095	0.149	0.151	-0.015	-0.006	0.123	0.113	0.184	0.082	0.191	0.079
ccnd1		92	2	18	12	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	undef	0.144	0.290
cdc2		96	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.162	0.297	0.336
orc6l		15	11	34	28	0.094	0.270	0.084	0.114	0.106	0.240	0.256	0.234	0.192	0.105	0.258	0.175	0.160

GO Enrichment output for subnetwork 1033-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
thymus development	GO:0048538		9.105E-08	6.98E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	6.883E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.109E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to UV	GO:0009411		1.604E-05	5.271E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	6.735E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	7.977E-03
positive regulation of B cell proliferation	GO:0030890		3.121E-05	7.179E-03
induction of an organ	GO:0001759		3.121E-05	6.526E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.028E-09	2.206E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.593E-08	4.389E-05
thymus development	GO:0048538		5.71E-08	4.65E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.651E-08	5.284E-05
G2/M transition of mitotic cell cycle	GO:0000086		7.906E-07	3.863E-04
muscle cell migration	GO:0014812		5.138E-06	2.092E-03
response to UV	GO:0009411		8.888E-06	3.102E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.437E-05	4.387E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.687E-05	4.58E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.763E-05	4.307E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.004E-05	4.45E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.031E-09	2.173E-05
interphase	GO:0051325		1.057E-08	1.271E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.128E-08	3.31E-05
thymus development	GO:0048538		6.393E-08	3.846E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.936E-08	4.781E-05
G2/M transition of mitotic cell cycle	GO:0000086		8.85E-07	3.549E-04
muscle cell migration	GO:0014812		5.571E-06	1.915E-03
response to UV	GO:0009411		8.889E-06	2.673E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.558E-05	4.164E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.888E-05	4.541E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.972E-05	4.314E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.028E-09	2.206E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.593E-08	4.389E-05
thymus development	GO:0048538		5.71E-08	4.65E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.651E-08	5.284E-05
G2/M transition of mitotic cell cycle	GO:0000086		7.906E-07	3.863E-04
muscle cell migration	GO:0014812		5.138E-06	2.092E-03
response to UV	GO:0009411		8.888E-06	3.102E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.437E-05	4.387E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.687E-05	4.58E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.763E-05	4.307E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.004E-05	4.45E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.031E-09	2.173E-05
interphase	GO:0051325		1.057E-08	1.271E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.128E-08	3.31E-05
thymus development	GO:0048538		6.393E-08	3.846E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.936E-08	4.781E-05
G2/M transition of mitotic cell cycle	GO:0000086		8.85E-07	3.549E-04
muscle cell migration	GO:0014812		5.571E-06	1.915E-03
response to UV	GO:0009411		8.889E-06	2.673E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.558E-05	4.164E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.888E-05	4.541E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.972E-05	4.314E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		5.842E-10	2.086E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		8.812E-09	1.573E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.036E-08	1.233E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.46E-08	1.303E-05
thymus development	GO:0048538		2.594E-08	1.853E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		2.594E-08	1.544E-05
G2/M transition of mitotic cell cycle	GO:0000086		1.067E-07	5.444E-05
response to UV	GO:0009411		2.863E-06	1.278E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.969E-06	1.972E-03
nuclear origin of replication recognition complex	GO:0005664		4.969E-06	1.774E-03
protein kinase regulator activity	GO:0019887		6.445E-06	2.092E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		3.315E-10	1.209E-06
interphase	GO:0051325		3.755E-10	6.85E-07
G1/S transition of mitotic cell cycle	GO:0000082		5.016E-09	6.099E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		6.139E-09	5.598E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.014E-08	7.395E-06
thymus development	GO:0048538		2.409E-08	1.465E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		3.983E-08	2.076E-05
G2/M transition of mitotic cell cycle	GO:0000086		6.125E-08	2.793E-05
response to UV	GO:0009411		1.539E-06	6.24E-04
origin recognition complex	GO:0000808		2.566E-06	9.361E-04
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		2.566E-06	8.51E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.031E-09	2.173E-05
interphase	GO:0051325		1.057E-08	1.271E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.128E-08	3.31E-05
thymus development	GO:0048538		6.393E-08	3.846E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.936E-08	4.781E-05
G2/M transition of mitotic cell cycle	GO:0000086		8.85E-07	3.549E-04
muscle cell migration	GO:0014812		5.571E-06	1.915E-03
response to UV	GO:0009411		8.889E-06	2.673E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.558E-05	4.164E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.888E-05	4.541E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.972E-05	4.314E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
thymus development	GO:0048538		9.105E-08	6.98E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	6.883E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.109E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to UV	GO:0009411		1.604E-05	5.271E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	6.735E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	7.977E-03
positive regulation of B cell proliferation	GO:0030890		3.121E-05	7.179E-03
induction of an organ	GO:0001759		3.121E-05	6.526E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
thymus development	GO:0048538		9.105E-08	6.98E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	6.883E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.109E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to UV	GO:0009411		1.604E-05	5.271E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	6.735E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	7.977E-03
positive regulation of B cell proliferation	GO:0030890		3.121E-05	7.179E-03
induction of an organ	GO:0001759		3.121E-05	6.526E-03

Van-De-Vijver file

Name	Accession Number	Link	P-val	Corrected P-val
thymus development	GO:0048538		7.366E-09	1.357E-05
muscle cell migration	GO:0014812		6.331E-06	5.834E-03
induction of an organ	GO:0001759		1.329E-05	8.162E-03
thyroid gland development	GO:0030878		1.771E-05	8.159E-03
T cell homeostasis	GO:0043029		1.771E-05	6.527E-03
developmental induction	GO:0031128		1.771E-05	5.439E-03
branching involved in ureteric bud morphogenesis	GO:0001658		2.276E-05	5.992E-03
lymphocyte homeostasis	GO:0002260		2.844E-05	6.551E-03
ureteric bud development	GO:0001657		4.923E-05	0.01008166
negative regulation of Wnt receptor signaling pathway	GO:0030178		4.923E-05	9.073E-03
leukocyte homeostasis	GO:0001776		6.622E-05	0.01109531

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
thymus development	GO:0048538		9.105E-08	6.98E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	6.883E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.109E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to UV	GO:0009411		1.604E-05	5.271E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	6.735E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	7.977E-03
positive regulation of B cell proliferation	GO:0030890		3.121E-05	7.179E-03
induction of an organ	GO:0001759		3.121E-05	6.526E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.58E-08	3.749E-05
interphase	GO:0051325		1.773E-08	2.103E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.882E-08	6.234E-05
thymus development	GO:0048538		1.214E-07	7.201E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.691E-07	8.025E-05
G2/M transition of mitotic cell cycle	GO:0000086		9.725E-07	3.846E-04
response to UV	GO:0009411		1.167E-05	3.957E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.811E-05	5.371E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		2.413E-05	6.362E-03
induction of an organ	GO:0001759		3.101E-05	7.358E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		3.256E-05	7.025E-03