Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 84779-10-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1730 | 1.115e-02 | 1.334e-02 | 1.075e-01 |
|---|
| IPC-NIBC-129 | 0.2777 | 8.815e-02 | 1.156e-01 | 6.324e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2430 | 2.337e-02 | 3.304e-02 | 4.220e-01 |
|---|
| Loi_GPL570 | 0.2029 | 4.205e-02 | 4.173e-02 | 2.240e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1560 | 2.600e-05 | 1.530e-04 | 3.250e-04 |
|---|
| Parker_GPL1390 | 0.2167 | 1.427e-01 | 1.464e-01 | 6.364e-01 |
|---|
| Parker_GPL887 | 0.0449 | 8.602e-01 | 8.744e-01 | 9.082e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3280 | 9.878e-02 | 7.211e-02 | 5.145e-01 |
|---|
| Schmidt | 0.2252 | 1.288e-02 | 1.819e-02 | 1.586e-01 |
|---|
| Sotiriou | 0.2997 | 3.330e-03 | 1.039e-03 | 7.653e-02 |
|---|
| Wang | 0.2315 | 1.180e-01 | 8.347e-02 | 4.067e-01 |
|---|
| Zhang | 0.2724 | 4.970e-02 | 2.835e-02 | 1.264e-01 |
|---|
| Zhou | 0.3956 | 8.302e-02 | 9.025e-02 | 4.827e-01 |
|---|
Expression data for subnetwork 84779-10-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 84779-10-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn1a |   | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ard1b | | 1 | 164 | 375 | 375 | -0.000 | -0.021 | 0.100 | -0.031 | 0.065 | 0.051 | 0.109 | -0.043 | 0.164 | 0.146 | -0.052 | -0.036 | -0.122 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| hif1a | | 2 | 104 | 120 | 118 | 0.097 | 0.246 | 0.089 | -0.009 | 0.101 | 0.088 | -0.152 | 0.011 | -0.043 | 0.119 | 0.172 | 0.129 | -0.135 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| cdc25a | | 9 | 27 | 109 | 90 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 | 0.264 |
|---|
| ard1a | | 2 | 104 | 247 | 237 | 0.019 | 0.141 | 0.130 | 0.229 | 0.128 | 0.205 | 0.064 | 0.218 | 0.139 | 0.061 | -0.015 | 0.014 | 0.124 |
|---|
GO Enrichment output for subnetwork 84779-10-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.438E-09 | 3.308E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 9.993E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 3.831E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.873E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 9.995E-06 | 2.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.305E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.68E-10 | 1.388E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 3.138E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 5.138E-06 | 2.51E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.138E-06 | 2.092E-03 |
|---|
| mRNA transcription | GO:0009299 | | 5.138E-06 | 1.793E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 5.138E-06 | 1.569E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 1.402E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 7.704E-06 | 1.882E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 7.704E-06 | 1.711E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 9.451E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 7.098E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 5.354E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 2.681E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 5.571E-06 | 2.234E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.571E-06 | 1.915E-03 |
|---|
| mRNA transcription | GO:0009299 | | 5.571E-06 | 1.675E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 5.571E-06 | 1.489E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 1.34E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 1.264E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.68E-10 | 1.388E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 3.138E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 5.138E-06 | 2.51E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.138E-06 | 2.092E-03 |
|---|
| mRNA transcription | GO:0009299 | | 5.138E-06 | 1.793E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 5.138E-06 | 1.569E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 1.402E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 7.704E-06 | 1.882E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 7.704E-06 | 1.711E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 9.451E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 7.098E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 5.354E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 2.681E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 5.571E-06 | 2.234E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.571E-06 | 1.915E-03 |
|---|
| mRNA transcription | GO:0009299 | | 5.571E-06 | 1.675E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 5.571E-06 | 1.489E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 1.34E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 1.264E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 1.628E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 1.498E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 5.951E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 1.01E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 9.066E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.824E-07 | 9.306E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.502E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.619E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 4.142E-06 | 1.479E-03 |
|---|
| mRNA transcription | GO:0009299 | | 4.142E-06 | 1.344E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.533E-11 | 5.593E-08 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.46E-11 | 4.488E-08 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.298E-09 | 5.226E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.752E-08 | 1.598E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 3.112E-08 | 2.27E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.031E-08 | 2.451E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.29E-08 | 2.235E-05 |
|---|
| interphase | GO:0051325 | | 4.451E-08 | 2.029E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.392E-07 | 3.807E-04 |
|---|
| response to UV | GO:0009411 | | 1.079E-06 | 3.938E-04 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 2.053E-06 | 6.809E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 9.451E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 7.098E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 5.354E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.571E-06 | 2.681E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 5.571E-06 | 2.234E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 5.571E-06 | 1.915E-03 |
|---|
| mRNA transcription | GO:0009299 | | 5.571E-06 | 1.675E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 5.571E-06 | 1.489E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.571E-06 | 1.34E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.78E-06 | 1.264E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 9.993E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 3.831E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.873E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 9.995E-06 | 2.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.305E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 9.993E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 3.831E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.873E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 9.995E-06 | 2.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.305E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 9.993E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 3.831E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.873E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 9.995E-06 | 2.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.305E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.438E-09 | 3.308E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 9.993E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 4.598E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 9.995E-06 | 3.831E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 9.995E-06 | 3.284E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 9.995E-06 | 2.873E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 2.554E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 9.995E-06 | 2.299E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 2.305E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.242E-10 | 2.193E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.195E-07 | 9.724E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.974E-07 | 7.89E-04 |
|---|
| interphase | GO:0051325 | | 1.093E-06 | 6.483E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.724E-06 | 3.666E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 7.724E-06 | 3.055E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 7.724E-06 | 2.619E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 7.724E-06 | 2.291E-03 |
|---|
| oxygen homeostasis | GO:0032364 | | 7.724E-06 | 2.037E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.055E-06 | 1.911E-03 |
|---|
| response to UV | GO:0009411 | | 9.845E-06 | 2.124E-03 |
|---|
