Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7465-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2037 | 9.375e-03 | 1.120e-02 | 9.440e-02 |
|---|
| IPC-NIBC-129 | 0.2360 | 5.670e-02 | 7.273e-02 | 4.907e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2514 | 1.062e-02 | 1.625e-02 | 2.730e-01 |
|---|
| Loi_GPL570 | 0.2401 | 7.433e-02 | 7.385e-02 | 3.386e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1634 | 9.000e-06 | 5.900e-05 | 6.500e-05 |
|---|
| Parker_GPL1390 | 0.2491 | 9.338e-02 | 9.252e-02 | 5.231e-01 |
|---|
| Parker_GPL887 | 0.0420 | 8.717e-01 | 8.849e-01 | 9.178e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3116 | 1.374e-01 | 1.057e-01 | 6.212e-01 |
|---|
| Schmidt | 0.2407 | 9.794e-03 | 1.400e-02 | 1.287e-01 |
|---|
| Sotiriou | 0.3164 | 1.524e-03 | 3.870e-04 | 4.337e-02 |
|---|
| Wang | 0.2155 | 1.049e-01 | 7.272e-02 | 3.770e-01 |
|---|
| Zhang | 0.2400 | 6.268e-02 | 3.744e-02 | 1.572e-01 |
|---|
| Zhou | 0.4426 | 9.687e-02 | 1.067e-01 | 5.397e-01 |
|---|
Expression data for subnetwork 7465-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7465-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrm2 |   | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| wee1 | | 2 | 104 | 289 | 284 | 0.169 | -0.036 | -0.023 | 0.062 | 0.083 | 0.129 | -0.162 | 0.112 | 0.043 | 0.033 | 0.086 | 0.008 | 0.328 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
| cdca3 | | 2 | 104 | 289 | 284 | 0.061 | 0.245 | 0.116 | 0.187 | 0.152 | -0.141 | 0.224 | 0.247 | 0.234 | 0.117 | 0.086 | 0.102 | 0.401 |
|---|
GO Enrichment output for subnetwork 7465-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.365E-10 | 1.694E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.256E-08 | 1.444E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.197E-08 | 1.684E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 8.282E-07 | 4.762E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.087E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.91E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.576E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.382E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.783E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.439E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.402E-11 | 1.32E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.273E-06 | 1.556E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.362E-06 | 1.109E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.151E-06 | 1.314E-03 |
|---|
| response to UV | GO:0009411 | | 2.348E-06 | 1.147E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.226E-06 | 1.313E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.515E-06 | 1.576E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.669E-06 | 1.426E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.876E-06 | 1.324E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 5.768E-06 | 1.409E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.018E-06 | 1.337E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.264E-09 | 7.536E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.502E-08 | 1.205E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.741E-07 | 1.649E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.504E-06 | 1.205E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.678E-06 | 1.074E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.158E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.014E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.102E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 8.384E-06 | 2.017E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.768E-06 | 1.918E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.402E-11 | 1.32E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.273E-06 | 1.556E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.362E-06 | 1.109E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.151E-06 | 1.314E-03 |
|---|
| response to UV | GO:0009411 | | 2.348E-06 | 1.147E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.226E-06 | 1.313E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.515E-06 | 1.576E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.669E-06 | 1.426E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.876E-06 | 1.324E-03 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 5.768E-06 | 1.409E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.018E-06 | 1.337E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.264E-09 | 7.536E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.502E-08 | 1.205E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.741E-07 | 1.649E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.504E-06 | 1.205E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.678E-06 | 1.074E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.158E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.014E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.102E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 8.384E-06 | 2.017E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.768E-06 | 1.918E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.114E-11 | 7.55E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.57E-11 | 8.159E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.639E-10 | 1.951E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.235E-10 | 3.781E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 6.294E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 5.717E-08 | 3.403E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 5.124E-07 | 2.614E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 6.346E-07 | 2.833E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.921E-06 | 7.623E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 8.432E-04 |
|---|
| response to UV | GO:0009411 | | 2.863E-06 | 9.295E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.06E-11 | 1.116E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 4.099E-11 | 7.476E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.16E-10 | 1.411E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 2.393E-10 | 2.183E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.139E-09 | 4.479E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 6.125E-08 | 3.724E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 6.512E-07 | 3.394E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 7.12E-07 | 3.247E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.158E-06 | 4.693E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.34E-06 | 4.887E-04 |
|---|
| response to UV | GO:0009411 | | 1.539E-06 | 5.105E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.264E-09 | 7.536E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.502E-08 | 1.205E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.741E-07 | 1.649E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.504E-06 | 1.205E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.678E-06 | 1.074E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.158E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.014E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.102E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 8.384E-06 | 2.017E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.768E-06 | 1.918E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.256E-08 | 1.444E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.197E-08 | 1.684E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 8.282E-07 | 4.762E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.087E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.91E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.576E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.382E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.783E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.439E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.256E-08 | 1.444E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.197E-08 | 1.684E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 8.282E-07 | 4.762E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.087E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.91E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.576E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.382E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.783E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.439E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.256E-08 | 1.444E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.197E-08 | 1.684E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 8.282E-07 | 4.762E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.087E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.91E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.576E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.382E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.783E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.439E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.256E-08 | 1.444E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.197E-08 | 1.684E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 8.282E-07 | 4.762E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.087E-06 | 2.8E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 2.91E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.576E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.382E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 3.783E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.439E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.252E-09 | 2.971E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.581E-08 | 3.062E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 4.127E-08 | 3.265E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.125E-06 | 6.676E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.289E-06 | 3.934E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.632E-06 | 3.414E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.551E-06 | 3.238E-03 |
|---|
| response to UV | GO:0009411 | | 1.167E-05 | 3.462E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.294E-05 | 3.412E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.811E-05 | 4.297E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.413E-05 | 5.205E-03 |
|---|
