Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7332-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1763 | 7.931e-03 | 9.465e-03 | 8.319e-02 |
|---|
| IPC-NIBC-129 | 0.2439 | 5.070e-02 | 6.460e-02 | 4.566e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2595 | 3.693e-02 | 4.988e-02 | 5.260e-01 |
|---|
| Loi_GPL570 | 0.1812 | 6.676e-02 | 6.631e-02 | 3.141e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1651 | 2.100e-05 | 1.270e-04 | 2.390e-04 |
|---|
| Parker_GPL1390 | 0.2573 | 1.363e-01 | 1.394e-01 | 6.238e-01 |
|---|
| Parker_GPL887 | 0.1198 | 5.801e-01 | 6.113e-01 | 6.258e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2942 | 1.241e-01 | 9.394e-02 | 5.877e-01 |
|---|
| Schmidt | 0.2282 | 1.385e-02 | 1.951e-02 | 1.675e-01 |
|---|
| Sotiriou | 0.2953 | 4.639e-03 | 1.578e-03 | 9.663e-02 |
|---|
| Wang | 0.2134 | 1.020e-01 | 7.036e-02 | 3.702e-01 |
|---|
| Zhang | 0.2501 | 6.470e-02 | 3.889e-02 | 1.619e-01 |
|---|
| Zhou | 0.3756 | 1.138e-01 | 1.269e-01 | 6.010e-01 |
|---|
Expression data for subnetwork 7332-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7332-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrm2 |   | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| cep55 | | 3 | 79 | 141 | 137 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.144 | 0.115 | 0.330 |
|---|
| brca1 | | 8 | 33 | 175 | 150 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | -0.124 | 0.305 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 | 0.209 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| pcnt | | 1 | 164 | 380 | 380 | -0.013 | 0.258 | 0.082 | -0.128 | 0.086 | 0.111 | 0.033 | 0.154 | 0.087 | 0.042 | 0.043 | 0.252 | 0.255 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
| ube2l3 | | 1 | 164 | 380 | 380 | 0.086 | 0.083 | 0.121 | 0.073 | 0.088 | 0.121 | 0.073 | 0.097 | 0.078 | -0.001 | -0.006 | 0.053 | 0.053 |
|---|
GO Enrichment output for subnetwork 7332-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 |  | 2.981E-08 | 6.856E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 5.212E-08 | 5.994E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 2.841E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.959E-06 | 1.127E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.789E-06 | 1.283E-03 |
|---|
| spindle organization | GO:0007051 | | 5.94E-06 | 2.277E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.371E-05 | 4.506E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.124E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.056E-05 | 4.728E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.056E-05 | 4.298E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 8.511E-05 |
|---|
| spindle organization | GO:0007051 | | 8.718E-07 | 1.065E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.482E-06 | 2.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.654E-06 | 1.621E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 3.321E-06 | 1.623E-03 |
|---|
| response to UV | GO:0009411 | | 4.571E-06 | 1.861E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.98E-06 | 1.738E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.98E-06 | 1.521E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.969E-06 | 1.892E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.969E-06 | 1.703E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 2.063E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.182E-08 | 2.843E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.834E-08 | 3.409E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 6.592E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 5.163E-07 | 3.105E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 7.964E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 1.887E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 1.729E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.087E-06 | 1.53E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 7.627E-06 | 2.039E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 7.627E-06 | 1.835E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 1.693E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 8.511E-05 |
|---|
| spindle organization | GO:0007051 | | 8.718E-07 | 1.065E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.482E-06 | 2.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.654E-06 | 1.621E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 3.321E-06 | 1.623E-03 |
|---|
| response to UV | GO:0009411 | | 4.571E-06 | 1.861E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.98E-06 | 1.738E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.98E-06 | 1.521E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.969E-06 | 1.892E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.969E-06 | 1.703E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 2.063E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.182E-08 | 2.843E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.834E-08 | 3.409E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 6.592E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 5.163E-07 | 3.105E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 7.964E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 1.887E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 1.729E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.087E-06 | 1.53E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 7.627E-06 | 2.039E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 7.627E-06 | 1.835E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 1.693E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 2.247E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.427E-08 | 2.889E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 5.951E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 1.01E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.318E-07 | 1.379E-04 |
|---|
| spindle organization | GO:0007051 | | 8.151E-07 | 4.158E-04 |
|---|
| microtubule organizing center part | GO:0044450 | | 1.002E-06 | 4.473E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.739E-06 | 1.087E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.202E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.325E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.163E-09 | 4.242E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.789E-08 | 1.238E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.826E-07 | 3.436E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 8.061E-07 | 7.351E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 1.425E-06 | 1.039E-03 |
|---|
| negative regulation of fatty acid metabolic process | GO:0045922 | | 1.196E-05 | 7.272E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.196E-05 | 6.234E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 1.196E-05 | 5.454E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.262E-05 | 5.115E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.459E-05 | 5.321E-03 |
|---|
| response to UV | GO:0009411 | | 1.675E-05 | 5.554E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.182E-08 | 2.843E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.834E-08 | 3.409E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 6.592E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 5.163E-07 | 3.105E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 7.964E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.706E-06 | 1.887E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 1.729E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.087E-06 | 1.53E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 7.627E-06 | 2.039E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 7.627E-06 | 1.835E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 1.693E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.981E-08 | 6.856E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 5.212E-08 | 5.994E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 2.841E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.959E-06 | 1.127E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.789E-06 | 1.283E-03 |
|---|
| spindle organization | GO:0007051 | | 5.94E-06 | 2.277E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.371E-05 | 4.506E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.124E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.056E-05 | 4.728E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.056E-05 | 4.298E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.981E-08 | 6.856E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 5.212E-08 | 5.994E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 2.841E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.959E-06 | 1.127E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.789E-06 | 1.283E-03 |
|---|
| spindle organization | GO:0007051 | | 5.94E-06 | 2.277E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.371E-05 | 4.506E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.124E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.056E-05 | 4.728E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.056E-05 | 4.298E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.981E-08 | 6.856E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 5.212E-08 | 5.994E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 2.841E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.959E-06 | 1.127E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.789E-06 | 1.283E-03 |
|---|
| spindle organization | GO:0007051 | | 5.94E-06 | 2.277E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.371E-05 | 4.506E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.124E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.056E-05 | 4.728E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.056E-05 | 4.298E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.981E-08 | 6.856E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 5.212E-08 | 5.994E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 2.841E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.959E-06 | 1.127E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.789E-06 | 1.283E-03 |
|---|
| spindle organization | GO:0007051 | | 5.94E-06 | 2.277E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.371E-05 | 4.506E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.124E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 4.568E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.056E-05 | 4.728E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.056E-05 | 4.298E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.1E-08 | 9.729E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.555E-08 | 7.778E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.172E-07 | 2.509E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.785E-06 | 1.059E-03 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.695E-06 | 1.279E-03 |
|---|
| spindle organization | GO:0007051 | | 6.273E-06 | 2.481E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 1.166E-05 | 3.952E-03 |
|---|
| regulation of centrosome duplication | GO:0010824 | | 1.166E-05 | 3.458E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.311E-05 | 3.458E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.511E-05 | 3.585E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.747E-05 | 3.77E-03 |
|---|
