Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7306-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2146 | 7.904e-03 | 9.432e-03 | 8.297e-02 |
|---|
| IPC-NIBC-129 | 0.3018 | 6.652e-02 | 8.609e-02 | 5.410e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2597 | 7.140e-03 | 1.137e-02 | 2.142e-01 |
|---|
| Loi_GPL570 | 0.2587 | 3.010e-02 | 2.984e-02 | 1.731e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1474 | 1.500e-05 | 9.100e-05 | 1.370e-04 |
|---|
| Parker_GPL1390 | 0.2374 | 8.012e-02 | 7.830e-02 | 4.846e-01 |
|---|
| Parker_GPL887 | 0.2326 | 2.889e-01 | 3.225e-01 | 2.911e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3067 | 9.618e-02 | 6.990e-02 | 5.062e-01 |
|---|
| Schmidt | 0.2336 | 1.509e-02 | 2.116e-02 | 1.784e-01 |
|---|
| Sotiriou | 0.2900 | 1.112e-03 | 2.590e-04 | 3.426e-02 |
|---|
| Wang | 0.1125 | 1.355e-01 | 9.809e-02 | 4.435e-01 |
|---|
| Zhang | 0.2750 | 2.701e-01 | 2.148e-01 | 5.409e-01 |
|---|
| Zhou | 0.4615 | 1.014e-01 | 1.121e-01 | 5.571e-01 |
|---|
Expression data for subnetwork 7306-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7306-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| stmn2 |   | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| gipc1 | | 1 | 164 | 136 | 148 | 0.079 | 0.069 | 0.055 | 0.102 | 0.087 | 0.290 | -0.045 | 0.277 | 0.118 | 0.047 | 0.055 | 0.029 | 0.133 |
|---|
| lama4 | | 5 | 50 | 136 | 121 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.200 | 0.057 | 0.089 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| gapdh | | 6 | 43 | 136 | 117 | 0.071 | 0.312 | 0.102 | 0.145 | 0.165 | 0.172 | -0.253 | 0.288 | 0.064 | 0.213 | 0.056 | -0.088 | 0.235 |
|---|
| tk1 | | 6 | 43 | 1 | 7 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.105 | -0.100 | 0.257 | 0.204 | 0.142 | 0.064 | 0.164 | 0.222 |
|---|
| slc2a1 | | 2 | 104 | 136 | 139 | 0.118 | 0.267 | 0.125 | 0.260 | 0.126 | 0.065 | -0.206 | 0.154 | 0.069 | 0.098 | 0.075 | -0.081 | 0.006 |
|---|
| tyrp1 | | 1 | 164 | 136 | 148 | -0.019 | 0.034 | 0.111 | 0.117 | 0.086 | -0.147 | 0.065 | 0.166 | 0.017 | 0.040 | 0.050 | 0.034 | 0.245 |
|---|
GO Enrichment output for subnetwork 7306-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 1.241E-05 | 0.02854035 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.241E-05 | 0.01427018 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.241E-05 | 9.513E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.241E-05 | 7.135E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.241E-05 | 5.708E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.757E-03 |
|---|
| glycolysis | GO:0006096 | | 1.646E-05 | 5.408E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.86E-05 | 5.348E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 6.58E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.602E-05 | 5.441E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.573E-06 | 0.01117228 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 5.794E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 4.743E-06 | 3.863E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 4.743E-06 | 2.897E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 7.112E-06 | 3.475E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 2.896E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 8.312E-06 | 2.901E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.77E-06 | 2.678E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 9.952E-06 | 2.701E-03 |
|---|
| melanosome organization | GO:0032438 | | 9.952E-06 | 2.431E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 9.952E-06 | 2.21E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 0.01132206 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.087E-06 | 4.08E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.087E-06 | 3.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.448E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 7.627E-06 | 3.058E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 8.659E-06 | 2.976E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.067E-05 | 2.853E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.067E-05 | 2.568E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.067E-05 | 2.334E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.573E-06 | 0.01117228 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.743E-06 | 5.794E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 4.743E-06 | 3.863E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 4.743E-06 | 2.897E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 7.112E-06 | 3.475E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.112E-06 | 2.896E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 8.312E-06 | 2.901E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.77E-06 | 2.678E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 9.952E-06 | 2.701E-03 |
|---|
| melanosome organization | GO:0032438 | | 9.952E-06 | 2.431E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 9.952E-06 | 2.21E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 0.01132206 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.087E-06 | 4.08E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.087E-06 | 3.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.448E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 7.627E-06 | 3.058E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 8.659E-06 | 2.976E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.067E-05 | 2.853E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.067E-05 | 2.568E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.067E-05 | 2.334E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 1.323E-04 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 4.142E-06 | 7.395E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 4.93E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 4.142E-06 | 3.697E-03 |
|---|
| dendritic shaft | GO:0043198 | | 4.142E-06 | 2.958E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.339E-06 | 2.583E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 3.168E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 6.21E-06 | 2.772E-03 |
|---|
| melanosome organization | GO:0032438 | | 6.21E-06 | 2.464E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 3.104E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 2.821E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 2.662E-04 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 3.763E-06 | 6.864E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.763E-06 | 4.576E-03 |
|---|
| dendritic shaft | GO:0043198 | | 3.763E-06 | 3.432E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 2.745E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.119E-06 | 2.504E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 2.94E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.642E-06 | 2.573E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.642E-06 | 2.287E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.642E-06 | 2.058E-03 |
|---|
| melanocyte differentiation | GO:0030318 | | 7.896E-06 | 2.619E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.706E-06 | 0.01132206 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 5.087E-06 | 4.08E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 5.087E-06 | 3.06E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.448E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 7.627E-06 | 3.058E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 8.659E-06 | 2.976E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 1.067E-05 | 2.853E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.067E-05 | 2.568E-03 |
|---|
| melanin biosynthetic process | GO:0042438 | | 1.067E-05 | 2.334E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 0.02854035 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.241E-05 | 0.01427018 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.241E-05 | 9.513E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.241E-05 | 7.135E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.241E-05 | 5.708E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.757E-03 |
|---|
| glycolysis | GO:0006096 | | 1.646E-05 | 5.408E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.86E-05 | 5.348E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 6.58E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.602E-05 | 5.441E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 0.02854035 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.241E-05 | 0.01427018 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.241E-05 | 9.513E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.241E-05 | 7.135E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.241E-05 | 5.708E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.757E-03 |
|---|
| glycolysis | GO:0006096 | | 1.646E-05 | 5.408E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.86E-05 | 5.348E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 6.58E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 0.02854035 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.241E-05 | 0.01427018 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.241E-05 | 9.513E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.241E-05 | 7.135E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.241E-05 | 5.708E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.757E-03 |
|---|
| glycolysis | GO:0006096 | | 1.646E-05 | 5.408E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.86E-05 | 5.348E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 6.58E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 0.02854035 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.241E-05 | 0.01427018 |
|---|
| melanin biosynthetic process from tyrosine | GO:0006583 | | 1.241E-05 | 9.513E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.241E-05 | 7.135E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.241E-05 | 5.708E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 4.757E-03 |
|---|
| glycolysis | GO:0006096 | | 1.646E-05 | 5.408E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.86E-05 | 5.348E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 6.58E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.985E-03 |
|---|
| negative regulation of cellular catabolic process | GO:0031330 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 2.302E-07 | 5.463E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 5.256E-07 | 6.236E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 9.812E-07 | 7.761E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.441E-06 | 8.547E-04 |
|---|
| alcohol catabolic process | GO:0046164 | | 2.246E-06 | 1.066E-03 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 4.106E-06 | 1.624E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.166E-05 | 3.952E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 1.166E-05 | 3.458E-03 |
|---|
| melanosome organization | GO:0032438 | | 1.166E-05 | 3.074E-03 |
|---|
| regulation of proteasomal ubiquitin-dependent protein catabolic process | GO:0032434 | | 1.166E-05 | 2.766E-03 |
|---|
| pigment granule organization | GO:0048753 | | 1.747E-05 | 3.77E-03 |
|---|
