Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7158-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1862 | 6.158e-03 | 7.333e-03 | 6.854e-02 |
|---|
| IPC-NIBC-129 | 0.2448 | 4.515e-02 | 5.711e-02 | 4.224e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2718 | 1.083e-02 | 1.653e-02 | 2.760e-01 |
|---|
| Loi_GPL570 | 0.2392 | 6.599e-02 | 6.554e-02 | 3.115e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1536 | 1.850e-04 | 8.480e-04 | 4.847e-03 |
|---|
| Parker_GPL1390 | 0.2657 | 1.190e-01 | 1.204e-01 | 5.870e-01 |
|---|
| Parker_GPL887 | 0.0785 | 7.294e-01 | 7.531e-01 | 7.853e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3591 | 6.520e-02 | 4.451e-02 | 3.928e-01 |
|---|
| Schmidt | 0.1966 | 1.219e-02 | 1.726e-02 | 1.521e-01 |
|---|
| Sotiriou | 0.3031 | 8.300e-04 | 1.790e-04 | 2.745e-02 |
|---|
| Wang | 0.1791 | 1.226e-01 | 8.725e-02 | 4.165e-01 |
|---|
| Zhang | 0.3124 | 1.061e-01 | 7.029e-02 | 2.532e-01 |
|---|
| Zhou | 0.4789 | 6.184e-02 | 6.546e-02 | 3.818e-01 |
|---|
Expression data for subnetwork 7158-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7158-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| tp53bp1 | | 1 | 164 | 186 | 193 | -0.138 | -0.008 | 0.064 | -0.074 | 0.041 | 0.105 | -0.504 | 0.104 | -0.066 | 0.076 | 0.117 | 0.007 | 0.288 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| h2afx | | 1 | 164 | 186 | 193 | 0.119 | 0.262 | 0.191 | 0.075 | 0.121 | 0.200 | 0.258 | 0.166 | 0.222 | 0.117 | -0.015 | 0.131 | 0.246 |
|---|
| dnm2 | | 6 | 43 | 93 | 81 | 0.089 | 0.127 | 0.114 | -0.049 | 0.065 | 0.251 | 0.291 | 0.177 | -0.039 | -0.048 | -0.099 | -0.044 | 0.262 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| dynll1 | | 5 | 50 | 93 | 82 | -0.012 | 0.108 | 0.088 | 0.087 | 0.098 | 0.124 | 0.134 | 0.128 | 0.113 | 0.093 | 0.158 | 0.074 | 0.360 |
|---|
GO Enrichment output for subnetwork 7158-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 4.505E-08 | 1.036E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.773E-07 | 4.339E-04 |
|---|
| interphase | GO:0051325 | | 4.14E-07 | 3.174E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.897E-06 | 2.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 2.345E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 1.954E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.515E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 3.075E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.426E-05 | 3.643E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.426E-05 | 3.279E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.832E-05 | 3.831E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.788E-08 | 4.367E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.614E-07 | 1.971E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 1.478E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 1.773E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 2.756E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.77E-06 | 2.363E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.701E-06 | 2.657E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.087E-05 | 2.952E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.087E-05 | 2.656E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 2.951E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 1.485E-04 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 1.123E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 9.009E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.113E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 9.276E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.001E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.788E-08 | 4.367E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.614E-07 | 1.971E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 1.33E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 1.478E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 1.773E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.77E-06 | 2.756E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.77E-06 | 2.363E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.701E-06 | 2.657E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.087E-05 | 2.952E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.087E-05 | 2.656E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.329E-05 | 2.951E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 1.485E-04 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 1.123E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 9.009E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.113E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 9.276E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.001E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.131E-09 | 2.904E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.132E-08 | 1.095E-04 |
|---|
| replication fork | GO:0005657 | | 4.689E-07 | 5.582E-04 |
|---|
| damaged DNA binding | GO:0003684 | | 1.194E-06 | 1.066E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.578E-06 | 1.127E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.578E-06 | 1.534E-03 |
|---|
| cytoplasmic dynein complex | GO:0005868 | | 2.578E-06 | 1.315E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.865E-06 | 1.725E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.31E-06 | 1.71E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 5.41E-06 | 1.932E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.41E-06 | 1.756E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 5.799E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.049E-07 | 1.913E-04 |
|---|
| interphase | GO:0051325 | | 1.158E-07 | 1.408E-04 |
|---|
| replication fork | GO:0005657 | | 5.469E-07 | 4.988E-04 |
|---|
| damaged DNA binding | GO:0003684 | | 1.474E-06 | 1.075E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 1.118E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.634E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.43E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 1.906E-03 |
|---|
| cytoplasmic dynein complex | GO:0005868 | | 4.703E-06 | 1.716E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 1.56E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 1.485E-04 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 1.123E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 9.009E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.113E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 9.276E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.001E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.274E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.505E-08 | 1.036E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.773E-07 | 4.339E-04 |
|---|
| interphase | GO:0051325 | | 4.14E-07 | 3.174E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.897E-06 | 2.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 2.345E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 1.954E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.515E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 3.075E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.426E-05 | 3.643E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.426E-05 | 3.279E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.832E-05 | 3.831E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.505E-08 | 1.036E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.773E-07 | 4.339E-04 |
|---|
| interphase | GO:0051325 | | 4.14E-07 | 3.174E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.897E-06 | 2.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 2.345E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 1.954E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.515E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 3.075E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.426E-05 | 3.643E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.426E-05 | 3.279E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.832E-05 | 3.831E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.505E-08 | 1.036E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.773E-07 | 4.339E-04 |
|---|
| interphase | GO:0051325 | | 4.14E-07 | 3.174E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.897E-06 | 2.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 2.345E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 1.954E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.515E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 3.075E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.426E-05 | 3.643E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.426E-05 | 3.279E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.832E-05 | 3.831E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.505E-08 | 1.036E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.773E-07 | 4.339E-04 |
|---|
| interphase | GO:0051325 | | 4.14E-07 | 3.174E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.897E-06 | 2.241E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 2.345E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 1.954E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.515E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 3.075E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.426E-05 | 3.643E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.426E-05 | 3.279E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.832E-05 | 3.831E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.002E-08 | 1.424E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.494E-07 | 5.332E-04 |
|---|
| interphase | GO:0051325 | | 4.925E-07 | 3.896E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.512E-06 | 2.677E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.303E-06 | 2.517E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.95E-06 | 3.144E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.113E-05 | 3.772E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.483E-05 | 4.398E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.483E-05 | 3.91E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.381E-05 | 5.65E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.381E-05 | 5.136E-03 |
|---|
