Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7153-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2225 | 4.924e-03 | 5.852e-03 | 5.763e-02 |
|---|
| IPC-NIBC-129 | 0.2390 | 5.888e-02 | 7.569e-02 | 5.024e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2825 | 1.708e-02 | 2.492e-02 | 3.576e-01 |
|---|
| Loi_GPL570 | 0.2178 | 7.138e-02 | 7.090e-02 | 3.292e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1864 | 2.500e-05 | 1.470e-04 | 3.040e-04 |
|---|
| Parker_GPL1390 | 0.2464 | 7.171e-02 | 6.937e-02 | 4.577e-01 |
|---|
| Parker_GPL887 | 0.0597 | 8.024e-01 | 8.212e-01 | 8.565e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3175 | 1.370e-01 | 1.053e-01 | 6.202e-01 |
|---|
| Schmidt | 0.2259 | 1.147e-02 | 1.628e-02 | 1.452e-01 |
|---|
| Sotiriou | 0.3068 | 3.178e-03 | 9.790e-04 | 7.404e-02 |
|---|
| Wang | 0.1634 | 7.226e-02 | 4.706e-02 | 2.943e-01 |
|---|
| Zhang | 0.2403 | 1.327e-01 | 9.190e-02 | 3.073e-01 |
|---|
| Zhou | 0.3984 | 9.167e-02 | 1.005e-01 | 5.191e-01 |
|---|
Expression data for subnetwork 7153-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7153-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrm2 |   | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| pkd1 | | 9 | 27 | 234 | 205 | -0.021 | 0.055 | 0.007 | 0.037 | 0.071 | 0.184 | 0.256 | -0.217 | -0.068 | -0.001 | 0.046 | 0.077 | 0.151 |
|---|
| orc6l | | 8 | 33 | 73 | 61 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.086 | 0.175 | 0.160 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
GO Enrichment output for subnetwork 7153-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 4.282E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.674E-05 | 3.851E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 4.898E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.811E-06 | 2.213E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.937E-06 | 1.578E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.705E-06 | 1.652E-03 |
|---|
| response to UV | GO:0009411 | | 3.338E-06 | 1.631E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.055E-06 | 1.651E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 5.676E-06 | 1.981E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 5.676E-06 | 1.733E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.676E-06 | 1.541E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.635E-06 | 1.621E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 6.929E-06 | 1.539E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 8.781E-06 | 2.113E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 8.781E-06 | 1.921E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.811E-06 | 2.213E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.937E-06 | 1.578E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.705E-06 | 1.652E-03 |
|---|
| response to UV | GO:0009411 | | 3.338E-06 | 1.631E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.055E-06 | 1.651E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 5.676E-06 | 1.981E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 5.676E-06 | 1.733E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.676E-06 | 1.541E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.635E-06 | 1.621E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 6.929E-06 | 1.539E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 8.781E-06 | 2.113E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 8.781E-06 | 1.921E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 1.628E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.268E-10 | 3.889E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 8.436E-10 | 7.531E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 8.989E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.858E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 3.729E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 4.041E-04 |
|---|
| microtubule organizing center part | GO:0044450 | | 1.002E-06 | 3.976E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.739E-06 | 9.781E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.093E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.438E-11 | 1.174E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.121E-10 | 2.58E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.374E-10 | 3.989E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 5.118E-05 |
|---|
| microtubule organizing center part | GO:0044450 | | 7.417E-07 | 3.865E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 4.078E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.778E-07 | 3.963E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.589E-06 | 5.798E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 6.099E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 8.781E-06 | 2.113E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 8.781E-06 | 1.921E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 4.282E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.674E-05 | 3.851E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 4.898E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 4.282E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.674E-05 | 3.851E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 4.282E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.674E-05 | 3.851E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.117E-05 | 4.282E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.674E-05 | 3.851E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| detection of mechanical stimulus | GO:0050982 | | 9.649E-10 | 2.29E-06 |
|---|
| cartilage condensation | GO:0001502 | | 1.35E-09 | 1.602E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.593E-09 | 2.842E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.714E-08 | 2.797E-05 |
|---|
| response to mechanical stimulus | GO:0009612 | | 6.159E-08 | 2.923E-05 |
|---|
| cell cycle arrest | GO:0007050 | | 6.314E-08 | 2.497E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 7.537E-08 | 2.555E-05 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.789E-07 | 5.307E-05 |
|---|
| detection of abiotic stimulus | GO:0009582 | | 2.557E-07 | 6.741E-05 |
|---|
| cartilage development | GO:0051216 | | 4.796E-07 | 1.138E-04 |
|---|
| skeletal system morphogenesis | GO:0048705 | | 5.93E-07 | 1.279E-04 |
|---|
