Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6794-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2209 | 7.026e-03 | 8.377e-03 | 7.585e-02 |
|---|
| IPC-NIBC-129 | 0.2141 | 1.017e-01 | 1.340e-01 | 6.788e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2654 | 6.489e-03 | 1.043e-02 | 2.017e-01 |
|---|
| Loi_GPL570 | 0.2632 | 9.979e-02 | 9.921e-02 | 4.130e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1692 | 3.200e-05 | 1.850e-04 | 4.450e-04 |
|---|
| Parker_GPL1390 | 0.2060 | 7.335e-02 | 7.110e-02 | 4.631e-01 |
|---|
| Parker_GPL887 | 0.0817 | 7.170e-01 | 7.415e-01 | 7.726e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3278 | 1.251e-01 | 9.483e-02 | 5.903e-01 |
|---|
| Schmidt | 0.2221 | 1.184e-02 | 1.679e-02 | 1.488e-01 |
|---|
| Sotiriou | 0.3049 | 1.410e-03 | 3.510e-04 | 4.094e-02 |
|---|
| Wang | 0.1968 | 9.557e-02 | 6.522e-02 | 3.548e-01 |
|---|
| Zhang | 0.2493 | 8.226e-02 | 5.184e-02 | 2.018e-01 |
|---|
| Zhou | 0.4472 | 8.324e-02 | 9.051e-02 | 4.837e-01 |
|---|
Expression data for subnetwork 6794-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6794-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| ccnb2 |   | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| stk11 | | 1 | 164 | 300 | 304 | -0.071 | 0.026 | 0.071 | 0.036 | 0.060 | 0.039 | 0.307 | 0.103 | -0.020 | 0.261 | -0.029 | -0.050 | 0.124 |
|---|
| rps6ka3 | | 1 | 164 | 300 | 304 | 0.022 | 0.223 | 0.086 | 0.078 | 0.077 | 0.113 | -0.212 | 0.155 | 0.142 | -0.004 | 0.163 | 0.057 | -0.071 |
|---|
GO Enrichment output for subnetwork 6794-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 3.082E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.957E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.455E-05 | 3.043E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.985E-07 | 2.424E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.321E-07 | 1.89E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.028E-06 | 2.46E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 2.132E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.664E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 6.934E-06 | 2.42E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 6.934E-06 | 2.117E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 8.144E-06 | 2.211E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 9.157E-06 | 2.237E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 9.157E-06 | 2.034E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.448E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.04E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.445E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.568E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 1.067E-05 | 2.334E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.164E-08 | 1.506E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.985E-07 | 2.424E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.321E-07 | 1.89E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.028E-06 | 2.46E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 2.132E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 2.664E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 6.934E-06 | 2.42E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 6.934E-06 | 2.117E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 8.144E-06 | 2.211E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 9.157E-06 | 2.237E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 9.157E-06 | 2.034E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.448E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.04E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.445E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.568E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 1.067E-05 | 2.334E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 5.213E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 4.632E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.013E-08 | 4.776E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.516E-08 | 7.603E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 2.367E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.957E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 4.969E-06 | 2.535E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 3.104E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.759E-03 |
|---|
| centriolar satellite | GO:0034451 | | 6.954E-06 | 2.483E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 9.269E-06 | 3.009E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 5.799E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 8.325E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 6.657E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 7.387E-05 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 3.136E-06 | 2.288E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.907E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.634E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 2.144E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 1.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.703E-06 | 1.716E-03 |
|---|
| centriolar satellite | GO:0034451 | | 6.582E-06 | 2.183E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.375E-07 | 2.857E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.789E-07 | 2.237E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 4.706E-06 | 2.831E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 2.448E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 2.04E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 7.739E-06 | 2.328E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 9.145E-06 | 2.445E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.067E-05 | 2.568E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 1.067E-05 | 2.334E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 3.082E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.957E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.455E-05 | 3.043E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 3.082E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.957E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.455E-05 | 3.043E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 3.082E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.957E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.455E-05 | 3.043E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 3.75E-07 | 4.313E-04 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 4.249E-07 | 3.258E-04 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.694E-06 | 9.74E-04 |
|---|
| regulation of cellular component biogenesis | GO:0044087 | | 1.924E-06 | 8.849E-04 |
|---|
| regulation of actin filament polymerization | GO:0030833 | | 7.38E-06 | 2.829E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 2.919E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 2.554E-03 |
|---|
| regulation of protein polymerization | GO:0032271 | | 1.206E-05 | 3.082E-03 |
|---|
| regulation of actin polymerization or depolymerization | GO:0008064 | | 1.286E-05 | 2.957E-03 |
|---|
| regulation of actin filament length | GO:0030832 | | 1.455E-05 | 3.043E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.042E-07 | 2.474E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.867E-06 | 8.147E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.029E-05 | 8.143E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.441E-05 | 8.546E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.92E-05 | 9.111E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.92E-05 | 7.593E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.082E-05 | 0.01044897 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.082E-05 | 9.143E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.082E-05 | 8.127E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.765E-05 | 8.935E-03 |
|---|
| thymus development | GO:0048538 | | 3.765E-05 | 8.123E-03 |
|---|
