Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6617-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1728 | 3.248e-03 | 3.843e-03 | 4.152e-02 |
|---|
| IPC-NIBC-129 | 0.2609 | 4.843e-02 | 6.153e-02 | 4.429e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.3026 | 6.271e-03 | 1.012e-02 | 1.973e-01 |
|---|
| Loi_GPL570 | 0.2648 | 5.294e-02 | 5.255e-02 | 2.658e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1376 | 1.800e-05 | 1.100e-04 | 1.880e-04 |
|---|
| Parker_GPL1390 | 0.2606 | 1.430e-01 | 1.467e-01 | 6.370e-01 |
|---|
| Parker_GPL887 | 0.1585 | 4.610e-01 | 4.954e-01 | 4.906e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3252 | 8.437e-02 | 6.004e-02 | 4.663e-01 |
|---|
| Schmidt | 0.2306 | 7.995e-03 | 1.153e-02 | 1.098e-01 |
|---|
| Sotiriou | 0.3288 | 6.363e-03 | 2.349e-03 | 1.201e-01 |
|---|
| Wang | 0.1882 | 1.581e-01 | 1.174e-01 | 4.872e-01 |
|---|
| Zhang | 0.2877 | 9.305e-02 | 6.009e-02 | 2.254e-01 |
|---|
| Zhou | 0.3564 | 8.528e-02 | 9.292e-02 | 4.925e-01 |
|---|
Expression data for subnetwork 6617-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6617-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| polr2e | | 1 | 164 | 175 | 185 | 0.092 | 0.011 | 0.084 | 0.075 | 0.058 | 0.132 | -0.050 | 0.177 | 0.074 | 0.107 | -0.089 | -0.095 | 0.140 |
|---|
| snapc1 | | 2 | 104 | 175 | 174 | -0.061 | 0.155 | 0.094 | 0.099 | 0.087 | 0.156 | 0.313 | 0.085 | 0.117 | 0.038 | 0.139 | 0.260 | -0.222 |
|---|
| rrm2 | | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| polr2f | | 1 | 164 | 175 | 185 | -0.141 | 0.109 | 0.086 | 0.218 | 0.074 | 0.114 | 0.444 | 0.073 | 0.109 | -0.019 | -0.095 | 0.177 | 0.013 |
|---|
| brca1 | | 8 | 33 | 175 | 150 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | -0.124 | 0.305 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 | 0.209 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| polr2h | | 3 | 79 | 175 | 162 | 0.021 | 0.282 | 0.144 | 0.302 | 0.127 | 0.204 | 0.069 | 0.129 | 0.257 | 0.153 | 0.128 | 0.165 | 0.236 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
| snapc4 | | 1 | 164 | 175 | 185 | 0.053 | 0.164 | 0.077 | -0.074 | 0.076 | 0.107 | 0.221 | 0.062 | 0.053 | 0.016 | 0.093 | 0.064 | 0.221 |
|---|
| mnat1 | | 3 | 79 | 175 | 162 | -0.011 | 0.083 | 0.075 | 0.305 | 0.105 | 0.111 | -0.009 | 0.107 | 0.118 | -0.002 | 0.144 | 0.307 | 0.086 |
|---|
GO Enrichment output for subnetwork 6617-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 |  | 3.661E-09 | 8.42E-06 |
|---|
| RNA elongation | GO:0006354 | | 4.543E-09 | 5.225E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 4.283E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 2.832E-08 | 1.628E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 3.968E-08 | 1.825E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.938E-08 | 2.66E-05 |
|---|
| transcription initiation | GO:0006352 | | 7.577E-08 | 2.489E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 7.806E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 8.958E-07 | 2.289E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.605E-06 | 5.992E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.5E-06 | 9.41E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.534E-10 | 8.634E-07 |
|---|
| RNA elongation | GO:0006354 | | 5.184E-10 | 6.333E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.68E-10 | 4.625E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 3.435E-09 | 2.098E-06 |
|---|
| transcription initiation | GO:0006352 | | 8.572E-09 | 4.188E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.593E-08 | 1.463E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.933E-07 | 6.747E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 2.367E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 1.311E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 1.255E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.138E-06 | 1.141E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 5.894E-10 | 1.418E-06 |
|---|
| RNA elongation | GO:0006354 | | 8.71E-10 | 1.048E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.047E-09 | 8.398E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 5.219E-09 | 3.139E-06 |
|---|
| transcription initiation | GO:0006352 | | 1.345E-08 | 6.472E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.764E-08 | 7.075E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 4.23E-08 | 1.454E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 1.769E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.809E-07 | 7.51E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 7.7E-07 | 1.853E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 2.443E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.534E-10 | 8.634E-07 |
|---|
| RNA elongation | GO:0006354 | | 5.184E-10 | 6.333E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.68E-10 | 4.625E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 3.435E-09 | 2.098E-06 |
|---|
| transcription initiation | GO:0006352 | | 8.572E-09 | 4.188E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.593E-08 | 1.463E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.933E-07 | 6.747E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 2.367E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 1.311E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.138E-06 | 1.255E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.138E-06 | 1.141E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 5.894E-10 | 1.418E-06 |
|---|
| RNA elongation | GO:0006354 | | 8.71E-10 | 1.048E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.047E-09 | 8.398E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 5.219E-09 | 3.139E-06 |
|---|
| transcription initiation | GO:0006352 | | 1.345E-08 | 6.472E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.764E-08 | 7.075E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 4.23E-08 | 1.454E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 1.769E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.809E-07 | 7.51E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 7.7E-07 | 1.853E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 2.443E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 4.647E-10 | 1.66E-06 |
|---|
| RNA elongation | GO:0006354 | | 6.455E-10 | 1.153E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.169E-10 | 8.533E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 3.239E-09 | 2.892E-06 |
|---|
| transcription initiation | GO:0006352 | | 9.083E-09 | 6.487E-06 |
|---|
| DNA-directed RNA polymerase activity | GO:0003899 | | 2.327E-08 | 1.385E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.814E-08 | 1.946E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.134E-08 | 3.631E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.122E-07 | 4.451E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.942E-07 | 6.936E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.549E-07 | 2.775E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 2.332E-09 | 8.509E-06 |
|---|
| RNA elongation | GO:0006354 | | 3.286E-09 | 5.994E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.015E-09 | 6.099E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 1.259E-08 | 1.149E-05 |
|---|
| transcription initiation | GO:0006352 | | 3.611E-08 | 2.634E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.032E-07 | 6.277E-05 |
|---|
| DNA-directed RNA polymerase activity | GO:0003899 | | 1.489E-07 | 7.762E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.479E-07 | 1.131E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.677E-07 | 2.706E-04 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.026E-06 | 3.741E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.236E-06 | 1.073E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 5.894E-10 | 1.418E-06 |
|---|
| RNA elongation | GO:0006354 | | 8.71E-10 | 1.048E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.047E-09 | 8.398E-07 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 5.219E-09 | 3.139E-06 |
|---|
| transcription initiation | GO:0006352 | | 1.345E-08 | 6.472E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.764E-08 | 7.075E-06 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 4.23E-08 | 1.454E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.884E-08 | 1.769E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.809E-07 | 7.51E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 7.7E-07 | 1.853E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 2.443E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.661E-09 | 8.42E-06 |
|---|
| RNA elongation | GO:0006354 | | 4.543E-09 | 5.225E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 4.283E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 2.832E-08 | 1.628E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 3.968E-08 | 1.825E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.938E-08 | 2.66E-05 |
|---|
| transcription initiation | GO:0006352 | | 7.577E-08 | 2.489E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 7.806E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 8.958E-07 | 2.289E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.605E-06 | 5.992E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.5E-06 | 9.41E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.661E-09 | 8.42E-06 |
|---|
| RNA elongation | GO:0006354 | | 4.543E-09 | 5.225E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 4.283E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 2.832E-08 | 1.628E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 3.968E-08 | 1.825E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.938E-08 | 2.66E-05 |
|---|
| transcription initiation | GO:0006352 | | 7.577E-08 | 2.489E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 7.806E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 8.958E-07 | 2.289E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.605E-06 | 5.992E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.5E-06 | 9.41E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.661E-09 | 8.42E-06 |
|---|
| RNA elongation | GO:0006354 | | 4.543E-09 | 5.225E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 4.283E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 2.832E-08 | 1.628E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 3.968E-08 | 1.825E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.938E-08 | 2.66E-05 |
|---|
| transcription initiation | GO:0006352 | | 7.577E-08 | 2.489E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 7.806E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 8.958E-07 | 2.289E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.605E-06 | 5.992E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.5E-06 | 9.41E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 3.661E-09 | 8.42E-06 |
|---|
| RNA elongation | GO:0006354 | | 4.543E-09 | 5.225E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.587E-09 | 4.283E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 2.832E-08 | 1.628E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 3.968E-08 | 1.825E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.938E-08 | 2.66E-05 |
|---|
| transcription initiation | GO:0006352 | | 7.577E-08 | 2.489E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.715E-07 | 7.806E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 8.958E-07 | 2.289E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.605E-06 | 5.992E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.5E-06 | 9.41E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA elongation from RNA polymerase II promoter | GO:0006368 | | 2.395E-09 | 5.683E-06 |
|---|
| RNA elongation | GO:0006354 | | 2.946E-09 | 3.495E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.593E-09 | 2.842E-06 |
|---|
| transcription initiation from RNA polymerase II promoter | GO:0006367 | | 1.985E-08 | 1.178E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.714E-08 | 2.237E-05 |
|---|
| transcription initiation | GO:0006352 | | 5.352E-08 | 2.117E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 7.537E-08 | 2.555E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.789E-07 | 5.307E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 4.877E-07 | 1.286E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 2.051E-06 | 4.867E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.839E-06 | 6.123E-04 |
|---|
