Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6517-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1841 | 9.727e-03 | 1.162e-02 | 9.705e-02 |
|---|
| IPC-NIBC-129 | 0.2814 | 1.020e-01 | 1.345e-01 | 6.799e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2496 | 1.723e-02 | 2.511e-02 | 3.593e-01 |
|---|
| Loi_GPL570 | 0.2174 | 3.992e-02 | 3.960e-02 | 2.153e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1700 | 3.700e-05 | 2.090e-04 | 5.420e-04 |
|---|
| Parker_GPL1390 | 0.2058 | 1.225e-01 | 1.241e-01 | 5.946e-01 |
|---|
| Parker_GPL887 | 0.1769 | 4.115e-01 | 4.464e-01 | 4.333e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3069 | 7.572e-02 | 5.295e-02 | 4.346e-01 |
|---|
| Schmidt | 0.2201 | 1.275e-02 | 1.802e-02 | 1.574e-01 |
|---|
| Sotiriou | 0.3003 | 1.684e-03 | 4.390e-04 | 4.669e-02 |
|---|
| Wang | 0.1114 | 9.428e-02 | 6.420e-02 | 3.517e-01 |
|---|
| Zhang | 0.2981 | 2.740e-01 | 2.185e-01 | 5.465e-01 |
|---|
| Zhou | 0.4366 | 1.012e-01 | 1.119e-01 | 5.563e-01 |
|---|
Expression data for subnetwork 6517-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6517-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| stmn2 |   | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| lama4 | | 5 | 50 | 136 | 121 | 0.079 | 0.190 | 0.023 | -0.039 | 0.041 | 0.126 | -0.167 | -0.168 | -0.007 | -0.089 | 0.200 | 0.057 | 0.089 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| gapdh | | 6 | 43 | 136 | 117 | 0.071 | 0.312 | 0.102 | 0.145 | 0.165 | 0.172 | -0.253 | 0.288 | 0.064 | 0.213 | 0.056 | -0.088 | 0.235 |
|---|
| tk1 | | 6 | 43 | 1 | 7 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.105 | -0.100 | 0.257 | 0.204 | 0.142 | 0.064 | 0.164 | 0.222 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| slc2a4 | | 1 | 164 | 318 | 324 | -0.082 | 0.061 | 0.097 | 0.059 | 0.070 | -0.137 | -0.121 | -0.031 | 0.048 | 0.140 | -0.106 | 0.148 | -0.087 |
|---|
GO Enrichment output for subnetwork 6517-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 9.995E-06 | 0.02298776 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 0.01149388 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 9.064E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.851E-05 | 0.01064077 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 9.643E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 8.036E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 2.2E-05 | 7.228E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.793E-05 | 8.031E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.793E-05 | 7.139E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.178E-05 | 7.309E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.337E-05 | 6.978E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.028E-06 | 9.841E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 5.331E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 5.328E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.323E-06 | 4.473E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.726E-06 | 3.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.969E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 4.259E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.317E-05 | 4.022E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.317E-05 | 3.575E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.376E-05 | 3.362E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.564E-05 | 3.474E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.068E-06 | 9.788E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 5.564E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 3.709E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.488E-06 | 4.504E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.344E-06 | 4.015E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 4.445E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.36E-05 | 4.09E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.422E-05 | 3.802E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.486E-05 | 3.576E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 3.636E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.028E-06 | 9.841E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.364E-06 | 5.331E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.543E-06 | 5.328E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.323E-06 | 4.473E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.726E-06 | 3.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 4.969E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.22E-05 | 4.259E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.317E-05 | 4.022E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.317E-05 | 3.575E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.376E-05 | 3.362E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.564E-05 | 3.474E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.068E-06 | 9.788E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 5.564E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 3.709E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.488E-06 | 4.504E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.344E-06 | 4.015E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 4.445E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.36E-05 | 4.09E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.422E-05 | 3.802E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.486E-05 | 3.576E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 3.636E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 9.263E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-06 | 5.437E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 3.944E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 4.436E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 4.603E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 4.139E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 3.548E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 6.954E-06 | 3.104E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 9.269E-06 | 3.678E-03 |
|---|
| kinase regulator activity | GO:0019207 | | 1.127E-05 | 4.025E-03 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.172E-05 | 3.804E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 1.997E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.095E-06 | 5.646E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 3.813E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 2.86E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 3.431E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 2.859E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.703E-06 | 2.451E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 5.601E-06 | 2.554E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.463E-06 | 2.62E-03 |
|---|
| laminin-1 complex | GO:0005606 | | 6.582E-06 | 2.401E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.769E-06 | 2.245E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 4.068E-06 | 9.788E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 5.564E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 3.709E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 7.488E-06 | 4.504E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.344E-06 | 4.015E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 5.186E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 4.445E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 1.36E-05 | 4.09E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.422E-05 | 3.802E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.486E-05 | 3.576E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 3.636E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.02298776 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 0.01149388 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 9.064E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.851E-05 | 0.01064077 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 9.643E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 8.036E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 2.2E-05 | 7.228E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.793E-05 | 8.031E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.793E-05 | 7.139E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.178E-05 | 7.309E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.337E-05 | 6.978E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.02298776 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 0.01149388 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 9.064E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.851E-05 | 0.01064077 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 9.643E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 8.036E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 2.2E-05 | 7.228E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.793E-05 | 8.031E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.793E-05 | 7.139E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.178E-05 | 7.309E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.02298776 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 0.01149388 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 9.064E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.851E-05 | 0.01064077 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 9.643E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 8.036E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 2.2E-05 | 7.228E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.793E-05 | 8.031E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.793E-05 | 7.139E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.178E-05 | 7.309E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.995E-06 | 0.02298776 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.995E-06 | 0.01149388 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 9.064E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.851E-05 | 0.01064077 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 9.643E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.096E-05 | 8.036E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 2.2E-05 | 7.228E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.793E-05 | 8.031E-03 |
|---|
| regulation of embryonic development | GO:0045995 | | 2.793E-05 | 7.139E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.178E-05 | 7.309E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| glycolysis | GO:0006096 | | 1.53E-07 | 3.631E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 3.497E-07 | 4.149E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 6.533E-07 | 5.168E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 9.599E-07 | 5.695E-04 |
|---|
| alcohol catabolic process | GO:0046164 | | 1.498E-06 | 7.108E-04 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 2.74E-06 | 1.084E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.59E-06 | 3.251E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.438E-05 | 4.265E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.973E-05 | 5.202E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.012E-05 | 4.773E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.68E-05 | 5.782E-03 |
|---|
