Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 64400-8-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2207 | 7.228e-03 | 8.619e-03 | 7.751e-02 |
|---|
| IPC-NIBC-129 | 0.2190 | 1.064e-01 | 1.404e-01 | 6.934e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2640 | 1.691e-02 | 2.469e-02 | 3.557e-01 |
|---|
| Loi_GPL570 | 0.2183 | 9.345e-02 | 9.289e-02 | 3.955e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1749 | 4.200e-05 | 2.330e-04 | 6.500e-04 |
|---|
| Parker_GPL1390 | 0.2027 | 7.355e-02 | 7.131e-02 | 4.638e-01 |
|---|
| Parker_GPL887 | 0.0115 | 9.774e-01 | 9.802e-01 | 9.915e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3809 | 3.024e-01 | 2.629e-01 | 8.673e-01 |
|---|
| Schmidt | 0.2183 | 1.560e-02 | 2.185e-02 | 1.829e-01 |
|---|
| Sotiriou | 0.2880 | 3.629e-03 | 1.158e-03 | 8.136e-02 |
|---|
| Wang | 0.1569 | 8.710e-02 | 5.853e-02 | 3.337e-01 |
|---|
| Zhang | 0.1598 | 1.455e-01 | 1.026e-01 | 3.322e-01 |
|---|
| Zhou | 0.3904 | 5.023e-02 | 5.210e-02 | 3.184e-01 |
|---|
Expression data for subnetwork 64400-8-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 64400-8-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| ccnb2 |   | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| ldoc1 | | 1 | 164 | 398 | 398 | 0.177 | 0.054 | 0.055 | 0.115 | 0.096 | 0.037 | -0.238 | 0.121 | 0.106 | 0.096 | 0.024 | -0.138 | -0.031 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| aktip | | 1 | 164 | 398 | 398 | 0.095 | 0.032 | 0.081 | 0.043 | 0.066 | 0.031 | 0.105 | 0.163 | -0.057 | -0.030 | 0.098 | -0.059 | 0.133 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| utp14a | | 1 | 164 | 398 | 398 | -0.167 | 0.159 | 0.127 | 0.174 | 0.093 | undef | undef | 0.065 | 0.186 | 0.042 | 0.125 | 0.027 | 0.140 |
|---|
GO Enrichment output for subnetwork 64400-8-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.591E-09 | 5.96E-06 |
|---|
| meiosis | GO:0007126 | | 6.233E-07 | 7.168E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 6.658E-07 | 5.104E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.681E-06 | 9.664E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 2.376E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 9.546E-04 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 8.972E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 3.54E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 3.922E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 4.332E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.441E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.679E-10 | 8.988E-07 |
|---|
| positive regulation of protein amino acid phosphorylation | GO:0001934 | | 1.782E-07 | 2.176E-04 |
|---|
| regulation of protein binding | GO:0043393 | | 1.828E-07 | 1.488E-04 |
|---|
| meiosis | GO:0007126 | | 2.568E-07 | 1.568E-04 |
|---|
| positive regulation of phosphorylation | GO:0042327 | | 2.568E-07 | 1.255E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 2.699E-07 | 1.099E-04 |
|---|
| positive regulation of phosphorus metabolic process | GO:0010562 | | 2.834E-07 | 9.89E-05 |
|---|
| positive regulation of protein modification process | GO:0031401 | | 3.928E-07 | 1.2E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.533E-07 | 1.502E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.16E-07 | 1.505E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.767E-06 | 8.366E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| positive regulation of protein amino acid phosphorylation | GO:0001934 | | 2.568E-07 | 3.09E-04 |
|---|
| regulation of protein binding | GO:0043393 | | 2.627E-07 | 2.107E-04 |
|---|
| meiosis | GO:0007126 | | 2.87E-07 | 1.726E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.03E-07 | 1.458E-04 |
|---|
| positive regulation of phosphorylation | GO:0042327 | | 3.738E-07 | 1.499E-04 |
|---|
| positive regulation of phosphorus metabolic process | GO:0010562 | | 4.135E-07 | 1.421E-04 |
|---|
| positive regulation of protein modification process | GO:0031401 | | 5.775E-07 | 1.737E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 2.1E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 2.129E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 1.947E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.679E-10 | 8.988E-07 |
|---|
| positive regulation of protein amino acid phosphorylation | GO:0001934 | | 1.782E-07 | 2.176E-04 |
|---|
| regulation of protein binding | GO:0043393 | | 1.828E-07 | 1.488E-04 |
|---|
| meiosis | GO:0007126 | | 2.568E-07 | 1.568E-04 |
|---|
| positive regulation of phosphorylation | GO:0042327 | | 2.568E-07 | 1.255E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 2.699E-07 | 1.099E-04 |
|---|
| positive regulation of phosphorus metabolic process | GO:0010562 | | 2.834E-07 | 9.89E-05 |
|---|
| positive regulation of protein modification process | GO:0031401 | | 3.928E-07 | 1.2E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.533E-07 | 1.502E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.16E-07 | 1.505E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.767E-06 | 8.366E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| positive regulation of protein amino acid phosphorylation | GO:0001934 | | 2.568E-07 | 3.09E-04 |
|---|
| regulation of protein binding | GO:0043393 | | 2.627E-07 | 2.107E-04 |
|---|
| meiosis | GO:0007126 | | 2.87E-07 | 1.726E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.03E-07 | 1.458E-04 |
|---|
| positive regulation of phosphorylation | GO:0042327 | | 3.738E-07 | 1.499E-04 |
|---|
| positive regulation of phosphorus metabolic process | GO:0010562 | | 4.135E-07 | 1.421E-04 |
|---|
| positive regulation of protein modification process | GO:0031401 | | 5.775E-07 | 1.737E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 2.1E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 2.129E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 1.947E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 1.628E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.268E-10 | 3.889E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 8.436E-10 | 7.531E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 8.989E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.858E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 7.771E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.824E-07 | 8.143E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 2.901E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 3.233E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.739E-06 | 8.892E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.438E-11 | 1.174E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.121E-10 | 2.58E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.374E-10 | 3.989E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 5.118E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 4.387E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.049E-07 | 4.783E-05 |
|---|
| interphase | GO:0051325 | | 1.158E-07 | 4.693E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 3.262E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.778E-07 | 3.243E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.651E-10 | 1.6E-06 |
|---|
| positive regulation of protein amino acid phosphorylation | GO:0001934 | | 2.568E-07 | 3.09E-04 |
|---|
| regulation of protein binding | GO:0043393 | | 2.627E-07 | 2.107E-04 |
|---|
| meiosis | GO:0007126 | | 2.87E-07 | 1.726E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.03E-07 | 1.458E-04 |
|---|
| positive regulation of phosphorylation | GO:0042327 | | 3.738E-07 | 1.499E-04 |
|---|
| positive regulation of phosphorus metabolic process | GO:0010562 | | 4.135E-07 | 1.421E-04 |
|---|
| positive regulation of protein modification process | GO:0031401 | | 5.775E-07 | 1.737E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.856E-07 | 2.1E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.85E-07 | 2.129E-04 |
|---|
| interphase | GO:0051325 | | 8.9E-07 | 1.947E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 5.96E-06 |
|---|
| meiosis | GO:0007126 | | 6.233E-07 | 7.168E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 6.658E-07 | 5.104E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.681E-06 | 9.664E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 2.376E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 9.546E-04 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 8.972E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 3.54E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 3.922E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 4.332E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.441E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 5.96E-06 |
|---|
| meiosis | GO:0007126 | | 6.233E-07 | 7.168E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 6.658E-07 | 5.104E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.681E-06 | 9.664E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 2.376E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 9.546E-04 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 8.972E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 3.54E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 3.922E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 4.332E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 5.96E-06 |
|---|
| meiosis | GO:0007126 | | 6.233E-07 | 7.168E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 6.658E-07 | 5.104E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.681E-06 | 9.664E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 2.376E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 9.546E-04 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 8.972E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 3.54E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 3.922E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 4.332E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 5.96E-06 |
|---|
| meiosis | GO:0007126 | | 6.233E-07 | 7.168E-04 |
|---|
| meiotic cell cycle | GO:0051321 | | 6.658E-07 | 5.104E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.681E-06 | 9.664E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 2.376E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.49E-06 | 9.546E-04 |
|---|
| interphase | GO:0051325 | | 2.731E-06 | 8.972E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.231E-05 | 3.54E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 3.922E-03 |
|---|
| response to UV | GO:0009411 | | 1.884E-05 | 4.332E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 5.441E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.182E-09 | 5.178E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.333E-06 | 1.582E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.931E-06 | 1.528E-03 |
|---|
| interphase | GO:0051325 | | 2.116E-06 | 1.255E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.134E-05 | 5.383E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 5.169E-03 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 5.413E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 6.594E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.962E-05 | 7.81E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.962E-05 | 7.029E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 3.687E-05 | 7.953E-03 |
|---|
