Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 60312-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1535	6.175e-03	7.353e-03	6.868e-02
IPC-NIBC-129	0.2504	1.367e-02	1.570e-02	1.617e-01
Ivshina_GPL96-GPL97	0.2716	1.214e-02	1.833e-02	2.952e-01
Loi_GPL570	0.2339	6.112e-02	6.069e-02	2.949e-01
Loi_GPL96-GPL97	0.1717	1.000e-06	6.000e-06	1.000e-06
Parker_GPL1390	0.3511	1.858e-01	1.943e-01	7.096e-01
Parker_GPL887	0.1074	6.230e-01	6.524e-01	6.731e-01
Pawitan_GPL96-GPL97	0.3797	1.418e-01	1.097e-01	6.316e-01
Schmidt	0.2768	4.446e-03	6.571e-03	6.823e-02
Sotiriou	0.3644	1.800e-03	4.780e-04	4.905e-02
Wang	0.1612	9.170e-02	6.215e-02	3.453e-01
Zhang	0.2369	1.369e-01	9.539e-02	3.156e-01
Zhou	0.4326	5.078e-02	5.273e-02	3.216e-01

Expression data for subnetwork 60312-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 60312-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
afap1		1	164	87	105	0.080	0.112	0.020	0.064	0.063	0.171	-0.283	0.200	-0.021	0.119	0.078	0.063	0.241
rrm2		21	10	44	26	0.131	0.207	0.227	0.187	0.161	0.178	0.137	0.303	0.190	0.219	0.117	0.129	0.302
cttn		9	27	44	37	0.067	0.065	0.123	0.238	0.126	0.263	-0.172	0.216	0.069	0.115	0.129	0.025	0.279
s100a1		2	104	44	52	-0.100	0.147	0.022	-0.057	0.048	0.011	0.134	0.085	0.103	0.032	0.027	0.014	-0.049
cdkn1a		70	3	73	51	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	0.015	-0.201	0.069
cct5		2	104	44	52	0.165	0.258	0.182	0.155	0.209	0.212	0.257	0.353	0.143	0.204	0.106	0.039	0.289
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
cks2		44	6	73	54	0.050	0.233	0.170	0.103	0.186	0.172	0.093	0.167	0.263	0.151	0.145	0.284	0.383
nckipsd		3	79	44	44	0.094	0.086	0.221	-0.049	0.109	-0.007	0.119	0.121	0.006	0.126	0.073	0.054	0.339
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
acta1		6	43	44	40	-0.003	0.098	-0.008	-0.030	0.119	0.174	0.376	0.024	0.182	0.214	-0.013	0.048	0.201
npm1		4	60	44	41	-0.005	0.172	0.085	0.197	0.093	0.221	-0.227	-0.050	0.065	0.169	-0.000	-0.086	0.199
grb2		9	27	1	4	0.084	-0.013	0.086	-0.031	0.162	-0.038	0.003	0.065	0.158	0.127	-0.097	0.194	-0.005

GO Enrichment output for subnetwork 60312-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.137E-11	2.615E-08
ribosome assembly	GO:0042255		7.465E-10	8.585E-07
centrosome cycle	GO:0007098		3.077E-09	2.359E-06
cell aging	GO:0007569		1.342E-08	7.718E-06
microtubule organizing center organization	GO:0031023		1.639E-08	7.54E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.338E-08	1.28E-05
deoxyribonucleotide biosynthetic process	GO:0009263		3.968E-08	1.304E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		6.098E-08	1.753E-05
regulation of microtubule-based process	GO:0032886		6.098E-08	1.558E-05
nucleoside diphosphate metabolic process	GO:0009132		6.938E-08	1.596E-05
microtubule cytoskeleton organization	GO:0000226		7.137E-08	1.492E-05

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.319E-12	3.222E-09
ribosome assembly	GO:0042255		2.628E-10	3.211E-07
centrosome cycle	GO:0007098		8.018E-10	6.529E-07
cell aging	GO:0007569		1.913E-09	1.168E-06
microtubule organizing center organization	GO:0031023		3.901E-09	1.906E-06
regulation of microtubule cytoskeleton organization	GO:0070507		8.189E-09	3.334E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		9.354E-09	3.265E-06
regulation of microtubule-based process	GO:0032886		1.714E-08	5.233E-06
positive regulation of transcription factor activity	GO:0051091		3.192E-08	8.665E-06
positive regulation of DNA binding	GO:0043388		5.02E-08	1.226E-05
positive regulation of binding	GO:0051099		6.97E-08	1.548E-05

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.18E-12	5.244E-09
ribosome assembly	GO:0042255		3.103E-10	3.732E-07
centrosome cycle	GO:0007098		1.324E-09	1.062E-06
cell aging	GO:0007569		2.585E-09	1.555E-06
microtubule organizing center organization	GO:0031023		6.438E-09	3.098E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.021E-08	4.094E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.543E-08	5.304E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.994E-08	5.998E-06
regulation of microtubule-based process	GO:0032886		2.243E-08	5.996E-06
positive regulation of transcription factor activity	GO:0051091		4.775E-08	1.149E-05
nucleoside diphosphate metabolic process	GO:0009132		4.781E-08	1.046E-05

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.319E-12	3.222E-09
ribosome assembly	GO:0042255		2.628E-10	3.211E-07
centrosome cycle	GO:0007098		8.018E-10	6.529E-07
cell aging	GO:0007569		1.913E-09	1.168E-06
microtubule organizing center organization	GO:0031023		3.901E-09	1.906E-06
regulation of microtubule cytoskeleton organization	GO:0070507		8.189E-09	3.334E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		9.354E-09	3.265E-06
regulation of microtubule-based process	GO:0032886		1.714E-08	5.233E-06
positive regulation of transcription factor activity	GO:0051091		3.192E-08	8.665E-06
positive regulation of DNA binding	GO:0043388		5.02E-08	1.226E-05
positive regulation of binding	GO:0051099		6.97E-08	1.548E-05

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.18E-12	5.244E-09
ribosome assembly	GO:0042255		3.103E-10	3.732E-07
centrosome cycle	GO:0007098		1.324E-09	1.062E-06
cell aging	GO:0007569		2.585E-09	1.555E-06
microtubule organizing center organization	GO:0031023		6.438E-09	3.098E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.021E-08	4.094E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.543E-08	5.304E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.994E-08	5.998E-06
regulation of microtubule-based process	GO:0032886		2.243E-08	5.996E-06
positive regulation of transcription factor activity	GO:0051091		4.775E-08	1.149E-05
nucleoside diphosphate metabolic process	GO:0009132		4.781E-08	1.046E-05

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
cyclin-dependent protein kinase regulator activity	GO:0016538		8.297E-11	2.963E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.306E-08	4.118E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.693E-08	6.776E-05
protein kinase regulator activity	GO:0019887		1.561E-07	1.394E-04
kinase regulator activity	GO:0019207		3.306E-07	2.361E-04
skeletal myofibril assembly	GO:0014866		6.073E-06	3.614E-03
G1/S transition of mitotic cell cycle	GO:0000082		6.143E-06	3.134E-03
response to UV	GO:0009411		7.446E-06	3.324E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.105E-06	3.613E-03
insulin receptor substrate binding	GO:0043560		9.105E-06	3.251E-03
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		1.274E-05	4.136E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
cyclin-dependent protein kinase regulator activity	GO:0016538		2.659E-10	9.699E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.325E-08	4.241E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.523E-08	7.931E-05
protein kinase regulator activity	GO:0019887		1.868E-07	1.704E-04
kinase regulator activity	GO:0019207		3.309E-07	2.415E-04
G1/S transition of mitotic cell cycle	GO:0000082		5.039E-06	3.063E-03
response to UV	GO:0009411		5.788E-06	3.016E-03
muscle thin filament assembly	GO:0030240		5.984E-06	2.729E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		5.984E-06	2.426E-03
epidermal growth factor receptor binding	GO:0005154		5.984E-06	2.183E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.973E-06	2.976E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.18E-12	5.244E-09
ribosome assembly	GO:0042255		3.103E-10	3.732E-07
centrosome cycle	GO:0007098		1.324E-09	1.062E-06
cell aging	GO:0007569		2.585E-09	1.555E-06
microtubule organizing center organization	GO:0031023		6.438E-09	3.098E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.021E-08	4.094E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.543E-08	5.304E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.994E-08	5.998E-06
regulation of microtubule-based process	GO:0032886		2.243E-08	5.996E-06
positive regulation of transcription factor activity	GO:0051091		4.775E-08	1.149E-05
nucleoside diphosphate metabolic process	GO:0009132		4.781E-08	1.046E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.137E-11	2.615E-08
ribosome assembly	GO:0042255		7.465E-10	8.585E-07
centrosome cycle	GO:0007098		3.077E-09	2.359E-06
cell aging	GO:0007569		1.342E-08	7.718E-06
microtubule organizing center organization	GO:0031023		1.639E-08	7.54E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.338E-08	1.28E-05
deoxyribonucleotide biosynthetic process	GO:0009263		3.968E-08	1.304E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		6.098E-08	1.753E-05
regulation of microtubule-based process	GO:0032886		6.098E-08	1.558E-05
nucleoside diphosphate metabolic process	GO:0009132		6.938E-08	1.596E-05
microtubule cytoskeleton organization	GO:0000226		7.137E-08	1.492E-05

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.137E-11	2.615E-08
ribosome assembly	GO:0042255		7.465E-10	8.585E-07
centrosome cycle	GO:0007098		3.077E-09	2.359E-06
cell aging	GO:0007569		1.342E-08	7.718E-06
microtubule organizing center organization	GO:0031023		1.639E-08	7.54E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.338E-08	1.28E-05
deoxyribonucleotide biosynthetic process	GO:0009263		3.968E-08	1.304E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		6.098E-08	1.753E-05
regulation of microtubule-based process	GO:0032886		6.098E-08	1.558E-05
nucleoside diphosphate metabolic process	GO:0009132		6.938E-08	1.596E-05
microtubule cytoskeleton organization	GO:0000226		7.137E-08	1.492E-05

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.137E-11	2.615E-08
ribosome assembly	GO:0042255		7.465E-10	8.585E-07
centrosome cycle	GO:0007098		3.077E-09	2.359E-06
cell aging	GO:0007569		1.342E-08	7.718E-06
microtubule organizing center organization	GO:0031023		1.639E-08	7.54E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.338E-08	1.28E-05
deoxyribonucleotide biosynthetic process	GO:0009263		3.968E-08	1.304E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		6.098E-08	1.753E-05
regulation of microtubule-based process	GO:0032886		6.098E-08	1.558E-05
nucleoside diphosphate metabolic process	GO:0009132		6.938E-08	1.596E-05
microtubule cytoskeleton organization	GO:0000226		7.137E-08	1.492E-05

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.137E-11	2.615E-08
ribosome assembly	GO:0042255		7.465E-10	8.585E-07
centrosome cycle	GO:0007098		3.077E-09	2.359E-06
cell aging	GO:0007569		1.342E-08	7.718E-06
microtubule organizing center organization	GO:0031023		1.639E-08	7.54E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.338E-08	1.28E-05
deoxyribonucleotide biosynthetic process	GO:0009263		3.968E-08	1.304E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		6.098E-08	1.753E-05
regulation of microtubule-based process	GO:0032886		6.098E-08	1.558E-05
nucleoside diphosphate metabolic process	GO:0009132		6.938E-08	1.596E-05
microtubule cytoskeleton organization	GO:0000226		7.137E-08	1.492E-05

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome duplication	GO:0010824		6.789E-12	1.611E-08
regulation of centrosome cycle	GO:0046605		2.035E-11	2.415E-08
ribosome assembly	GO:0042255		1.839E-09	1.455E-06
centrosome cycle	GO:0007098		2.45E-09	1.454E-06
microtubule organizing center organization	GO:0031023		1.186E-08	5.628E-06
cell aging	GO:0007569		1.422E-08	5.624E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.166E-08	1.073E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.714E-08	1.398E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		4.783E-08	1.261E-05
microtubule cytoskeleton organization	GO:0000226		5.352E-08	1.27E-05
regulation of microtubule-based process	GO:0032886		5.438E-08	1.173E-05